Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4907 and GFF4908 overlap by 4 nucleotides GFF4908 and GFF4909 are separated by 78 nucleotides GFF4909 and GFF4910 are separated by 2 nucleotides GFF4910 and GFF4911 overlap by 1 nucleotides
GFF4907 - hypothetical protein, at 11,359 to 12,033
GFF4907
GFF4908 - hypothetical protein, at 12,030 to 12,323
GFF4908
GFF4909 - hypothetical protein, at 12,402 to 12,977
GFF4909
GFF4910 - hypothetical protein, at 12,980 to 14,923
GFF4910
GFF4911 - Multicopper oxidase MmcO, at 14,923 to 16,479
GFF4911
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.014 kb on + strand at 12.037 kb on - strand at 12.154 kb on + strand, within GFF4908 at 12.154 kb on + strand, within GFF4908 at 12.154 kb on + strand, within GFF4908 at 12.155 kb on - strand, within GFF4908 at 12.296 kb on + strand at 12.296 kb on + strand at 12.296 kb on + strand at 12.297 kb on - strand at 12.340 kb on + strand at 12.475 kb on + strand, within GFF4909 at 12.476 kb on - strand, within GFF4909 at 12.476 kb on - strand, within GFF4909 at 12.566 kb on + strand, within GFF4909 at 13.043 kb on + strand at 13.044 kb on - strand at 13.120 kb on - strand at 13.300 kb on + strand, within GFF4910 at 13.300 kb on + strand, within GFF4910 at 13.301 kb on - strand, within GFF4910 at 13.414 kb on - strand, within GFF4910 at 13.519 kb on - strand, within GFF4910 at 13.572 kb on + strand, within GFF4910 at 13.573 kb on - strand, within GFF4910 at 13.657 kb on - strand, within GFF4910 at 13.692 kb on + strand, within GFF4910 at 13.692 kb on + strand, within GFF4910 at 13.692 kb on + strand, within GFF4910 at 13.692 kb on + strand, within GFF4910 at 13.693 kb on - strand, within GFF4910 at 13.736 kb on - strand, within GFF4910 at 13.736 kb on - strand, within GFF4910 at 13.737 kb on + strand, within GFF4910 at 13.737 kb on + strand, within GFF4910 at 13.791 kb on + strand, within GFF4910 at 13.791 kb on + strand, within GFF4910 at 13.792 kb on - strand, within GFF4910 at 13.936 kb on - strand, within GFF4910 at 13.938 kb on + strand, within GFF4910 at 13.998 kb on + strand, within GFF4910 at 13.999 kb on - strand, within GFF4910 at 14.011 kb on - strand, within GFF4910 at 14.011 kb on - strand, within GFF4910 at 14.175 kb on + strand, within GFF4910 at 14.175 kb on + strand, within GFF4910 at 14.272 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.376 kb on + strand, within GFF4910 at 14.376 kb on + strand, within GFF4910 at 14.391 kb on + strand, within GFF4910 at 14.392 kb on - strand, within GFF4910 at 14.392 kb on - strand, within GFF4910 at 14.562 kb on + strand, within GFF4910 at 14.562 kb on + strand, within GFF4910 at 14.562 kb on + strand, within GFF4910 at 14.563 kb on - strand, within GFF4910 at 14.632 kb on + strand, within GFF4910 at 14.633 kb on - strand, within GFF4910 at 14.966 kb on + strand at 14.966 kb on + strand at 14.966 kb on + strand at 14.966 kb on + strand at 14.967 kb on - strand at 14.967 kb on - strand at 14.967 kb on - strand at 14.967 kb on - strand at 14.967 kb on - strand at 15.013 kb on + strand at 15.021 kb on + strand at 15.021 kb on + strand at 15.021 kb on + strand at 15.704 kb on + strand, within GFF4911 at 15.704 kb on + strand, within GFF4911
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 12,014 + -1.4 12,037 - -0.2 12,154 + GFF4908 0.42 -1.2 12,154 + GFF4908 0.42 -1.0 12,154 + GFF4908 0.42 -0.1 12,155 - GFF4908 0.43 -0.3 12,296 + -0.2 12,296 + -0.5 12,296 + +1.1 12,297 - -1.0 12,340 + -0.1 12,475 + GFF4909 0.13 +0.3 12,476 - GFF4909 0.13 -0.2 12,476 - GFF4909 0.13 +0.1 12,566 + GFF4909 0.28 +1.1 13,043 + +1.0 13,044 - -0.5 13,120 - -0.2 13,300 + GFF4910 0.16 -0.9 13,300 + GFF4910 0.16 +0.0 13,301 - GFF4910 0.17 -0.6 13,414 - GFF4910 0.22 +0.6 13,519 - GFF4910 0.28 -0.5 13,572 + GFF4910 0.30 +0.6 13,573 - GFF4910 0.31 -0.4 13,657 - GFF4910 0.35 +0.5 13,692 + GFF4910 0.37 -0.6 13,692 + GFF4910 0.37 +1.2 13,692 + GFF4910 0.37 +0.8 13,692 + GFF4910 0.37 +0.1 13,693 - GFF4910 0.37 +0.9 13,736 - GFF4910 0.39 -0.4 13,736 - GFF4910 0.39 -1.3 13,737 + GFF4910 0.39 +0.4 13,737 + GFF4910 0.39 -0.6 13,791 + GFF4910 0.42 +0.2 13,791 + GFF4910 0.42 -0.1 13,792 - GFF4910 0.42 +0.5 13,936 - GFF4910 0.49 -0.3 13,938 + GFF4910 0.49 -0.1 13,998 + GFF4910 0.52 -0.5 13,999 - GFF4910 0.52 +0.3 14,011 - GFF4910 0.53 -0.3 14,011 - GFF4910 0.53 -0.0 14,175 + GFF4910 0.61 +2.0 14,175 + GFF4910 0.61 +0.2 14,272 - GFF4910 0.66 -0.8 14,316 - GFF4910 0.69 -0.2 14,316 - GFF4910 0.69 +1.9 14,316 - GFF4910 0.69 -0.3 14,316 - GFF4910 0.69 -0.2 14,376 + GFF4910 0.72 -0.5 14,376 + GFF4910 0.72 +2.1 14,391 + GFF4910 0.73 +1.0 14,392 - GFF4910 0.73 -0.1 14,392 - GFF4910 0.73 -2.2 14,562 + GFF4910 0.81 +1.1 14,562 + GFF4910 0.81 -1.9 14,562 + GFF4910 0.81 -0.7 14,563 - GFF4910 0.81 -1.2 14,632 + GFF4910 0.85 -1.2 14,633 - GFF4910 0.85 +0.3 14,966 + -0.6 14,966 + +1.1 14,966 + -0.0 14,966 + -1.0 14,967 - +0.0 14,967 - -0.1 14,967 - +0.5 14,967 - -0.6 14,967 - -0.2 15,013 + -0.5 15,021 + +0.1 15,021 + +0.4 15,021 + +0.7 15,704 + GFF4911 0.50 -0.1 15,704 + GFF4911 0.50 -0.3
Or see this region's nucleotide sequence