Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4895 and GFF4896 are separated by 29 nucleotides GFF4896 and GFF4897 are separated by 120 nucleotides GFF4897 and GFF4898 are separated by 16 nucleotides
GFF4895 - hypothetical protein, at 75 to 305
GFF4895
GFF4896 - Protein ChrB, at 335 to 1,327
GFF4896
GFF4897 - Protein ChrB, at 1,448 to 1,894
GFF4897
GFF4898 - hypothetical protein, at 1,911 to 3,143
GFF4898
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1 at 0.336 kb on + strand at 0.337 kb on - strand at 0.363 kb on + strand at 0.364 kb on - strand at 0.642 kb on + strand, within GFF4896 at 0.642 kb on + strand, within GFF4896 at 0.642 kb on + strand, within GFF4896 at 0.643 kb on - strand, within GFF4896 at 0.683 kb on + strand, within GFF4896 at 1.026 kb on + strand, within GFF4896 at 1.026 kb on + strand, within GFF4896 at 1.026 kb on + strand, within GFF4896 at 1.027 kb on - strand, within GFF4896 at 1.027 kb on - strand, within GFF4896 at 1.188 kb on + strand, within GFF4896 at 1.189 kb on - strand, within GFF4896 at 1.242 kb on + strand at 1.254 kb on + strand at 1.389 kb on - strand at 1.389 kb on - strand at 1.664 kb on + strand, within GFF4897 at 1.664 kb on + strand, within GFF4897 at 1.665 kb on - strand, within GFF4897 at 1.835 kb on + strand, within GFF4897 at 1.836 kb on - strand, within GFF4897 at 1.836 kb on - strand, within GFF4897 at 1.848 kb on - strand, within GFF4897 at 1.878 kb on - strand at 1.977 kb on + strand at 1.978 kb on - strand at 2.038 kb on - strand, within GFF4898 at 2.223 kb on + strand, within GFF4898 at 2.223 kb on + strand, within GFF4898
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 336 + -0.5 337 - +0.3 363 + +0.4 364 - -0.8 642 + GFF4896 0.31 +0.0 642 + GFF4896 0.31 -0.7 642 + GFF4896 0.31 -1.9 643 - GFF4896 0.31 +0.2 683 + GFF4896 0.35 +0.3 1,026 + GFF4896 0.70 -0.3 1,026 + GFF4896 0.70 +0.2 1,026 + GFF4896 0.70 -0.2 1,027 - GFF4896 0.70 -0.5 1,027 - GFF4896 0.70 -0.5 1,188 + GFF4896 0.86 -1.4 1,189 - GFF4896 0.86 -0.4 1,242 + +0.4 1,254 + -1.6 1,389 - -1.0 1,389 - +0.8 1,664 + GFF4897 0.48 +0.6 1,664 + GFF4897 0.48 -2.5 1,665 - GFF4897 0.49 +1.4 1,835 + GFF4897 0.87 +0.1 1,836 - GFF4897 0.87 +0.1 1,836 - GFF4897 0.87 +1.4 1,848 - GFF4897 0.89 -0.8 1,878 - -0.1 1,977 + -0.1 1,978 - +0.8 2,038 - GFF4898 0.10 -0.3 2,223 + GFF4898 0.25 -0.0 2,223 + GFF4898 0.25 -0.3
Or see this region's nucleotide sequence