Strain Fitness in Xanthobacter sp. DMC5 around GFF4892

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4890 and GFF4891 are separated by 117 nucleotidesGFF4891 and GFF4892 are separated by 80 nucleotidesGFF4892 and GFF4893 are separated by 22 nucleotides GFF4890 - hypothetical protein, at 32,964 to 33,767 GFF4890 GFF4891 - Ferredoxin-like protein FixX, at 33,885 to 34,181 GFF4891 GFF4892 - hypothetical protein, at 34,262 to 35,569 GFF4892 GFF4893 - Caffeyl-CoA reductase-Etf complex subunit CarE, at 35,592 to 36,701 GFF4893 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 33.504 kb on + strand, within GFF4890at 33.514 kb on + strand, within GFF4890at 33.515 kb on - strand, within GFF4890at 33.529 kb on + strand, within GFF4890at 33.529 kb on + strand, within GFF4890at 33.529 kb on + strand, within GFF4890at 33.530 kb on - strand, within GFF4890at 33.793 kb on + strandat 33.794 kb on - strandat 34.130 kb on - strand, within GFF4891at 34.419 kb on + strand, within GFF4892at 34.420 kb on - strand, within GFF4892at 34.473 kb on + strand, within GFF4892at 34.491 kb on - strand, within GFF4892at 34.521 kb on + strand, within GFF4892at 34.639 kb on + strand, within GFF4892at 34.640 kb on - strand, within GFF4892at 34.683 kb on + strand, within GFF4892at 34.683 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.735 kb on - strand, within GFF4892at 34.735 kb on - strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.806 kb on + strand, within GFF4892at 34.881 kb on + strand, within GFF4892at 34.882 kb on - strand, within GFF4892at 35.001 kb on + strand, within GFF4892at 35.154 kb on + strand, within GFF4892at 35.154 kb on + strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.262 kb on + strand, within GFF4892at 35.263 kb on - strand, within GFF4892at 35.263 kb on - strand, within GFF4892at 35.263 kb on - strand, within GFF4892at 35.506 kb on - strandat 35.506 kb on - strandat 35.506 kb on - strandat 35.554 kb on - strandat 35.803 kb on + strand, within GFF4893at 35.803 kb on + strand, within GFF4893at 35.803 kb on + strand, within GFF4893at 35.803 kb on + strand, within GFF4893at 35.804 kb on - strand, within GFF4893at 35.893 kb on + strand, within GFF4893at 35.893 kb on + strand, within GFF4893at 35.894 kb on - strand, within GFF4893at 36.002 kb on + strand, within GFF4893at 36.158 kb on - strand, within GFF4893at 36.158 kb on - strand, within GFF4893at 36.158 kb on - strand, within GFF4893at 36.169 kb on + strand, within GFF4893at 36.169 kb on + strand, within GFF4893at 36.169 kb on + strand, within GFF4893at 36.170 kb on - strand, within GFF4893at 36.170 kb on - strand, within GFF4893at 36.346 kb on + strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.379 kb on + strand, within GFF4893at 36.395 kb on - strand, within GFF4893at 36.425 kb on - strand, within GFF4893at 36.442 kb on + strand, within GFF4893at 36.443 kb on - strand, within GFF4893

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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33,504 + GFF4890 0.67 -0.0
33,514 + GFF4890 0.68 +0.1
33,515 - GFF4890 0.69 -0.0
33,529 + GFF4890 0.70 -1.4
33,529 + GFF4890 0.70 +0.9
33,529 + GFF4890 0.70 +0.9
33,530 - GFF4890 0.70 -1.8
33,793 + -0.2
33,794 - +0.2
34,130 - GFF4891 0.82 +0.2
34,419 + GFF4892 0.12 +0.4
34,420 - GFF4892 0.12 -0.6
34,473 + GFF4892 0.16 -0.3
34,491 - GFF4892 0.18 +0.3
34,521 + GFF4892 0.20 -2.4
34,639 + GFF4892 0.29 -0.4
34,640 - GFF4892 0.29 -1.3
34,683 + GFF4892 0.32 -1.1
34,683 + GFF4892 0.32 -0.6
34,734 + GFF4892 0.36 +1.8
34,734 + GFF4892 0.36 +0.5
34,734 + GFF4892 0.36 -0.2
34,734 + GFF4892 0.36 +1.1
34,735 - GFF4892 0.36 +0.8
34,735 - GFF4892 0.36 +1.1
34,804 + GFF4892 0.41 +0.8
34,804 + GFF4892 0.41 -1.2
34,804 + GFF4892 0.41 +1.0
34,804 + GFF4892 0.41 +0.4
34,804 + GFF4892 0.41 +0.4
34,804 + GFF4892 0.41 -0.7
34,804 + GFF4892 0.41 +0.1
34,804 + GFF4892 0.41 -1.3
34,804 + GFF4892 0.41 +0.1
34,804 + GFF4892 0.41 +0.5
34,805 - GFF4892 0.42 +0.4
34,805 - GFF4892 0.42 -0.1
34,805 - GFF4892 0.42 +0.7
34,805 - GFF4892 0.42 +1.2
34,805 - GFF4892 0.42 -0.3
34,805 - GFF4892 0.42 -1.2
34,805 - GFF4892 0.42 +0.1
34,805 - GFF4892 0.42 +0.8
34,806 + GFF4892 0.42 -0.8
34,881 + GFF4892 0.47 +0.7
34,882 - GFF4892 0.47 +2.2
35,001 + GFF4892 0.56 +0.1
35,154 + GFF4892 0.68 -1.6
35,154 + GFF4892 0.68 +0.3
35,155 - GFF4892 0.68 +0.5
35,155 - GFF4892 0.68 +0.8
35,155 - GFF4892 0.68 -0.9
35,155 - GFF4892 0.68 +0.1
35,262 + GFF4892 0.76 -0.4
35,263 - GFF4892 0.77 -0.0
35,263 - GFF4892 0.77 -1.6
35,263 - GFF4892 0.77 -0.5
35,506 - +0.5
35,506 - -1.2
35,506 - +0.2
35,554 - +0.1
35,803 + GFF4893 0.19 +0.1
35,803 + GFF4893 0.19 +1.6
35,803 + GFF4893 0.19 +0.1
35,803 + GFF4893 0.19 +0.1
35,804 - GFF4893 0.19 -0.4
35,893 + GFF4893 0.27 +0.8
35,893 + GFF4893 0.27 -0.1
35,894 - GFF4893 0.27 -1.4
36,002 + GFF4893 0.37 +0.7
36,158 - GFF4893 0.51 +0.2
36,158 - GFF4893 0.51 +1.1
36,158 - GFF4893 0.51 +0.3
36,169 + GFF4893 0.52 -1.1
36,169 + GFF4893 0.52 -0.2
36,169 + GFF4893 0.52 +0.6
36,170 - GFF4893 0.52 -0.5
36,170 - GFF4893 0.52 +0.4
36,346 + GFF4893 0.68 +1.2
36,347 - GFF4893 0.68 -0.6
36,347 - GFF4893 0.68 -0.1
36,347 - GFF4893 0.68 +0.4
36,347 - GFF4893 0.68 +1.2
36,347 - GFF4893 0.68 -1.1
36,347 - GFF4893 0.68 -0.4
36,347 - GFF4893 0.68 +0.6
36,379 + GFF4893 0.71 +1.1
36,395 - GFF4893 0.72 -1.0
36,425 - GFF4893 0.75 -1.2
36,442 + GFF4893 0.77 -0.4
36,443 - GFF4893 0.77 -1.2

Or see this region's nucleotide sequence