Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF486 and GFF487 are separated by 20 nucleotides GFF487 and GFF488 are separated by 162 nucleotides GFF488 and GFF489 are separated by 11 nucleotides
GFF486 - Lipoprotein-releasing system ATP-binding protein LolD, at 515,777 to 516,475
GFF486
GFF487 - hypothetical protein, at 516,496 to 516,681
GFF487
GFF488 - Vitamin B12 import ATP-binding protein BtuD, at 516,844 to 518,184
GFF488
GFF489 - hypothetical protein, at 518,196 to 519,932
GFF489
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 515.939 kb on - strand, within GFF486 at 516.060 kb on - strand, within GFF486 at 516.065 kb on + strand, within GFF486 at 516.065 kb on + strand, within GFF486 at 516.066 kb on - strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.651 kb on + strand, within GFF487 at 516.652 kb on - strand, within GFF487 at 516.652 kb on - strand, within GFF487 at 516.720 kb on + strand at 516.727 kb on + strand at 516.789 kb on - strand at 516.807 kb on + strand at 516.877 kb on - strand at 516.877 kb on - strand at 516.887 kb on + strand at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.056 kb on - strand, within GFF488 at 517.096 kb on + strand, within GFF488 at 517.097 kb on - strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.260 kb on - strand, within GFF488 at 517.260 kb on - strand, within GFF488 at 517.403 kb on + strand, within GFF488 at 517.403 kb on + strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 518.230 kb on + strand at 518.230 kb on + strand at 518.230 kb on + strand at 518.231 kb on - strand at 518.338 kb on + strand at 518.338 kb on + strand at 518.338 kb on + strand at 518.338 kb on + strand at 518.339 kb on - strand at 518.446 kb on + strand, within GFF489 at 518.446 kb on + strand, within GFF489 at 518.447 kb on - strand, within GFF489 at 518.449 kb on + strand, within GFF489 at 518.449 kb on + strand, within GFF489 at 518.449 kb on + strand, within GFF489 at 518.450 kb on - strand, within GFF489 at 518.476 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.576 kb on - strand, within GFF489 at 518.576 kb on - strand, within GFF489 at 518.890 kb on + strand, within GFF489 at 518.890 kb on + strand, within GFF489 at 518.890 kb on + strand, within GFF489 at 518.891 kb on - strand, within GFF489 at 518.891 kb on - strand, within GFF489 at 519.166 kb on + strand, within GFF489 at 519.167 kb on - strand, within GFF489 at 519.167 kb on - strand, within GFF489
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 515,939 - GFF486 0.23 +0.5 516,060 - GFF486 0.40 -1.3 516,065 + GFF486 0.41 +0.5 516,065 + GFF486 0.41 +0.4 516,066 - GFF486 0.41 -1.5 516,394 + GFF486 0.88 +0.1 516,394 + GFF486 0.88 -0.0 516,394 + GFF486 0.88 -0.3 516,395 - GFF486 0.88 -0.8 516,395 - GFF486 0.88 +0.4 516,395 - GFF486 0.88 +0.7 516,395 - GFF486 0.88 +0.4 516,651 + GFF487 0.83 +0.1 516,652 - GFF487 0.84 +0.6 516,652 - GFF487 0.84 +0.3 516,720 + -1.2 516,727 + -0.1 516,789 - +0.8 516,807 + +0.3 516,877 - -0.3 516,877 - -0.7 516,887 + +0.4 517,055 + GFF488 0.16 +0.0 517,055 + GFF488 0.16 -0.8 517,055 + GFF488 0.16 +0.4 517,055 + GFF488 0.16 +0.0 517,055 + GFF488 0.16 +1.2 517,055 + GFF488 0.16 +0.2 517,056 - GFF488 0.16 -0.7 517,096 + GFF488 0.19 +0.2 517,097 - GFF488 0.19 -0.7 517,259 + GFF488 0.31 +0.4 517,259 + GFF488 0.31 +1.2 517,259 + GFF488 0.31 -0.8 517,260 - GFF488 0.31 -1.1 517,260 - GFF488 0.31 -0.1 517,403 + GFF488 0.42 -0.5 517,403 + GFF488 0.42 +0.1 517,404 - GFF488 0.42 -0.5 517,404 - GFF488 0.42 +0.5 517,404 - GFF488 0.42 -0.1 517,404 - GFF488 0.42 +0.2 518,230 + +0.2 518,230 + +0.8 518,230 + +1.0 518,231 - -1.8 518,338 + -0.3 518,338 + +1.0 518,338 + -0.8 518,338 + +0.4 518,339 - -0.6 518,446 + GFF489 0.14 +0.7 518,446 + GFF489 0.14 -0.6 518,447 - GFF489 0.14 -1.3 518,449 + GFF489 0.15 +0.2 518,449 + GFF489 0.15 +0.2 518,449 + GFF489 0.15 +1.0 518,450 - GFF489 0.15 -0.9 518,476 + GFF489 0.16 -1.9 518,575 + GFF489 0.22 -0.1 518,575 + GFF489 0.22 -0.1 518,575 + GFF489 0.22 +1.0 518,575 + GFF489 0.22 -0.1 518,575 + GFF489 0.22 -1.1 518,575 + GFF489 0.22 +0.2 518,576 - GFF489 0.22 -0.4 518,576 - GFF489 0.22 +0.3 518,890 + GFF489 0.40 +0.6 518,890 + GFF489 0.40 +0.8 518,890 + GFF489 0.40 -2.0 518,891 - GFF489 0.40 -2.1 518,891 - GFF489 0.40 -0.2 519,166 + GFF489 0.56 -0.2 519,167 - GFF489 0.56 +1.9 519,167 - GFF489 0.56 +0.1
Or see this region's nucleotide sequence