Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4859 and GFF4860 are separated by 62 nucleotides GFF4860 and GFF4861 are separated by 49 nucleotides GFF4861 and GFF4862 are separated by 146 nucleotides GFF4862 and GFF4863 are separated by 6 nucleotides
GFF4859 - Protein HesB, heterocyst, at 14,814 to 15,134
GFF4859
GFF4860 - hypothetical protein, at 15,197 to 15,598
GFF4860
GFF4861 - Cysteine desulfurase NifS, at 15,648 to 16,847
GFF4861
GFF4862 - hypothetical protein, at 16,994 to 17,209
GFF4862
GFF4863 - hypothetical protein, at 17,216 to 18,082
GFF4863
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.925 kb on + strand, within GFF4859 at 14.931 kb on + strand, within GFF4859 at 14.931 kb on + strand, within GFF4859 at 14.932 kb on - strand, within GFF4859 at 15.190 kb on + strand at 15.190 kb on + strand at 15.190 kb on + strand at 15.190 kb on + strand at 15.191 kb on - strand at 15.191 kb on - strand at 15.191 kb on - strand at 15.660 kb on + strand at 15.660 kb on + strand at 15.661 kb on - strand at 15.661 kb on - strand at 15.661 kb on - strand at 15.849 kb on + strand, within GFF4861 at 15.849 kb on + strand, within GFF4861 at 15.849 kb on + strand, within GFF4861 at 15.849 kb on + strand, within GFF4861 at 15.849 kb on + strand, within GFF4861 at 16.173 kb on - strand, within GFF4861 at 16.287 kb on + strand, within GFF4861 at 16.287 kb on + strand, within GFF4861 at 16.287 kb on + strand, within GFF4861 at 16.287 kb on + strand, within GFF4861 at 16.288 kb on - strand, within GFF4861 at 16.288 kb on - strand, within GFF4861 at 16.288 kb on - strand, within GFF4861 at 16.380 kb on - strand, within GFF4861 at 16.416 kb on + strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.417 kb on - strand, within GFF4861 at 16.554 kb on + strand, within GFF4861 at 16.555 kb on - strand, within GFF4861 at 16.555 kb on - strand, within GFF4861 at 16.724 kb on + strand, within GFF4861 at 16.969 kb on + strand at 16.992 kb on - strand at 17.039 kb on + strand, within GFF4862 at 17.039 kb on + strand, within GFF4862 at 17.040 kb on - strand, within GFF4862 at 17.040 kb on - strand, within GFF4862 at 17.236 kb on + strand at 17.237 kb on - strand at 17.318 kb on + strand, within GFF4863 at 17.318 kb on + strand, within GFF4863 at 17.319 kb on - strand, within GFF4863 at 17.319 kb on - strand, within GFF4863 at 17.554 kb on - strand, within GFF4863 at 17.684 kb on + strand, within GFF4863 at 17.685 kb on - strand, within GFF4863 at 17.685 kb on - strand, within GFF4863 at 17.744 kb on + strand, within GFF4863 at 17.745 kb on - strand, within GFF4863 at 17.745 kb on - strand, within GFF4863 at 17.745 kb on - strand, within GFF4863 at 17.745 kb on - strand, within GFF4863 at 17.801 kb on + strand, within GFF4863 at 17.801 kb on + strand, within GFF4863 at 17.802 kb on - strand, within GFF4863 at 17.802 kb on - strand, within GFF4863 at 17.802 kb on - strand, within GFF4863
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 14,925 + GFF4859 0.35 -2.9 14,931 + GFF4859 0.36 +0.4 14,931 + GFF4859 0.36 +0.1 14,932 - GFF4859 0.37 +1.1 15,190 + -0.1 15,190 + -0.4 15,190 + +0.4 15,190 + -0.0 15,191 - -0.2 15,191 - +0.1 15,191 - -1.0 15,660 + +0.4 15,660 + -0.4 15,661 - -0.6 15,661 - +0.5 15,661 - +0.5 15,849 + GFF4861 0.17 -1.4 15,849 + GFF4861 0.17 -0.8 15,849 + GFF4861 0.17 +0.4 15,849 + GFF4861 0.17 -0.1 15,849 + GFF4861 0.17 +0.8 16,173 - GFF4861 0.44 +1.1 16,287 + GFF4861 0.53 -1.0 16,287 + GFF4861 0.53 +0.5 16,287 + GFF4861 0.53 -0.2 16,287 + GFF4861 0.53 +0.5 16,288 - GFF4861 0.53 -0.8 16,288 - GFF4861 0.53 +1.4 16,288 - GFF4861 0.53 +0.4 16,380 - GFF4861 0.61 +0.8 16,416 + GFF4861 0.64 +0.4 16,417 - GFF4861 0.64 -1.2 16,417 - GFF4861 0.64 -0.3 16,417 - GFF4861 0.64 -1.2 16,417 - GFF4861 0.64 -0.7 16,417 - GFF4861 0.64 +1.1 16,417 - GFF4861 0.64 -0.4 16,417 - GFF4861 0.64 +0.3 16,554 + GFF4861 0.76 -0.9 16,555 - GFF4861 0.76 -0.4 16,555 - GFF4861 0.76 -0.5 16,724 + GFF4861 0.90 +0.1 16,969 + +2.4 16,992 - -1.0 17,039 + GFF4862 0.21 -0.4 17,039 + GFF4862 0.21 +0.7 17,040 - GFF4862 0.21 +0.1 17,040 - GFF4862 0.21 +0.5 17,236 + +1.0 17,237 - +0.6 17,318 + GFF4863 0.12 +1.3 17,318 + GFF4863 0.12 +0.1 17,319 - GFF4863 0.12 -0.0 17,319 - GFF4863 0.12 +0.3 17,554 - GFF4863 0.39 +0.1 17,684 + GFF4863 0.54 -0.7 17,685 - GFF4863 0.54 -2.3 17,685 - GFF4863 0.54 -1.1 17,744 + GFF4863 0.61 +0.4 17,745 - GFF4863 0.61 -0.6 17,745 - GFF4863 0.61 -0.1 17,745 - GFF4863 0.61 +0.6 17,745 - GFF4863 0.61 +0.2 17,801 + GFF4863 0.67 -1.9 17,801 + GFF4863 0.67 -0.3 17,802 - GFF4863 0.68 +0.1 17,802 - GFF4863 0.68 -0.1 17,802 - GFF4863 0.68 +0.1
Or see this region's nucleotide sequence