Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF484 and GFF485 overlap by 4 nucleotides GFF485 and GFF486 overlap by 8 nucleotides GFF486 and GFF487 are separated by 20 nucleotides
GFF484 - Macrolide export protein MacA, at 513,359 to 514,561
GFF484
GFF485 - hypothetical protein, at 514,558 to 515,784
GFF485
GFF486 - Lipoprotein-releasing system ATP-binding protein LolD, at 515,777 to 516,475
GFF486
GFF487 - hypothetical protein, at 516,496 to 516,681
GFF487
Position (kb) 514
515
516 Strain fitness (log2 ratio) -1
0
1 at 513.776 kb on + strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.920 kb on + strand, within GFF484 at 513.921 kb on - strand, within GFF484 at 513.989 kb on + strand, within GFF484 at 514.215 kb on - strand, within GFF484 at 514.218 kb on + strand, within GFF484 at 514.235 kb on - strand, within GFF484 at 514.287 kb on - strand, within GFF484 at 514.463 kb on + strand at 514.464 kb on - strand at 514.464 kb on - strand at 514.987 kb on + strand, within GFF485 at 514.987 kb on + strand, within GFF485 at 514.988 kb on - strand, within GFF485 at 515.015 kb on - strand, within GFF485 at 515.015 kb on - strand, within GFF485 at 515.015 kb on - strand, within GFF485 at 515.016 kb on + strand, within GFF485 at 515.016 kb on + strand, within GFF485 at 515.016 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.282 kb on - strand, within GFF485 at 515.282 kb on - strand, within GFF485 at 515.816 kb on + strand at 515.816 kb on + strand at 515.816 kb on + strand at 515.817 kb on - strand at 515.817 kb on - strand at 515.817 kb on - strand at 515.939 kb on - strand, within GFF486 at 516.060 kb on - strand, within GFF486 at 516.065 kb on + strand, within GFF486 at 516.065 kb on + strand, within GFF486 at 516.066 kb on - strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.651 kb on + strand, within GFF487 at 516.652 kb on - strand, within GFF487 at 516.652 kb on - strand, within GFF487 at 516.720 kb on + strand at 516.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 513,776 + GFF484 0.35 -0.8 513,777 - GFF484 0.35 -0.1 513,777 - GFF484 0.35 +0.2 513,777 - GFF484 0.35 -1.4 513,777 - GFF484 0.35 -0.4 513,920 + GFF484 0.47 +0.9 513,921 - GFF484 0.47 -0.7 513,989 + GFF484 0.52 +0.2 514,215 - GFF484 0.71 +0.2 514,218 + GFF484 0.71 -0.2 514,235 - GFF484 0.73 -0.0 514,287 - GFF484 0.77 +1.1 514,463 + -1.2 514,464 - +0.1 514,464 - -0.9 514,987 + GFF485 0.35 -0.5 514,987 + GFF485 0.35 -0.9 514,988 - GFF485 0.35 +0.1 515,015 - GFF485 0.37 -0.9 515,015 - GFF485 0.37 -0.2 515,015 - GFF485 0.37 -1.2 515,016 + GFF485 0.37 -0.1 515,016 + GFF485 0.37 +0.2 515,016 + GFF485 0.37 +0.1 515,281 + GFF485 0.59 +1.1 515,281 + GFF485 0.59 +0.2 515,281 + GFF485 0.59 +0.8 515,281 + GFF485 0.59 -0.7 515,282 - GFF485 0.59 +0.9 515,282 - GFF485 0.59 -0.7 515,816 + -1.6 515,816 + +0.4 515,816 + +0.9 515,817 - -1.6 515,817 - +0.1 515,817 - +0.8 515,939 - GFF486 0.23 +0.5 516,060 - GFF486 0.40 -1.3 516,065 + GFF486 0.41 +0.5 516,065 + GFF486 0.41 +0.4 516,066 - GFF486 0.41 -1.5 516,394 + GFF486 0.88 +0.1 516,394 + GFF486 0.88 -0.0 516,394 + GFF486 0.88 -0.3 516,395 - GFF486 0.88 -0.8 516,395 - GFF486 0.88 +0.4 516,395 - GFF486 0.88 +0.7 516,395 - GFF486 0.88 +0.4 516,651 + GFF487 0.83 +0.1 516,652 - GFF487 0.84 +0.6 516,652 - GFF487 0.84 +0.3 516,720 + -1.2 516,727 + -0.1
Or see this region's nucleotide sequence