Strain Fitness in Xanthobacter sp. DMC5 around GFF4848

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4846 and GFF4847 are separated by 40 nucleotidesGFF4847 and GFF4848 are separated by 9 nucleotidesGFF4848 and GFF4849 are separated by 19 nucleotidesGFF4849 and GFF4850 are separated by 22 nucleotidesGFF4850 and GFF4851 are separated by 62 nucleotides GFF4846 - Nitrogenase molybdenum-iron protein beta chain, at 5,286 to 6,725 GFF4846 GFF4847 - hypothetical protein, at 6,766 to 7,161 GFF4847 GFF4848 - hypothetical protein, at 7,171 to 7,641 GFF4848 GFF4849 - hypothetical protein, at 7,661 to 7,861 GFF4849 GFF4850 - Ferredoxin-3, at 7,884 to 8,180 GFF4850 GFF4851 - hypothetical protein, at 8,243 to 8,896 GFF4851 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1at 6.471 kb on + strand, within GFF4846at 6.471 kb on + strand, within GFF4846at 6.471 kb on + strand, within GFF4846at 6.472 kb on - strand, within GFF4846at 6.472 kb on - strand, within GFF4846at 6.660 kb on - strandat 6.841 kb on + strand, within GFF4847at 6.841 kb on + strand, within GFF4847at 6.841 kb on + strand, within GFF4847at 6.841 kb on + strand, within GFF4847at 6.842 kb on - strand, within GFF4847at 6.842 kb on - strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 7.019 kb on + strand, within GFF4847at 7.020 kb on + strand, within GFF4847at 7.166 kb on + strandat 7.167 kb on - strandat 7.309 kb on + strand, within GFF4848at 7.309 kb on + strand, within GFF4848at 7.310 kb on - strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.312 kb on - strand, within GFF4848at 7.695 kb on - strand, within GFF4849at 7.889 kb on + strandat 7.889 kb on + strandat 7.890 kb on - strandat 7.926 kb on + strand, within GFF4850at 7.926 kb on + strand, within GFF4850at 7.974 kb on + strand, within GFF4850at 7.975 kb on - strand, within GFF4850at 7.975 kb on - strand, within GFF4850at 7.976 kb on - strand, within GFF4850at 8.261 kb on + strandat 8.261 kb on + strandat 8.261 kb on + strandat 8.261 kb on + strandat 8.262 kb on - strandat 8.262 kb on - strandat 8.262 kb on - strandat 8.516 kb on - strand, within GFF4851at 8.528 kb on + strand, within GFF4851at 8.528 kb on + strand, within GFF4851at 8.528 kb on + strand, within GFF4851at 8.529 kb on - strand, within GFF4851at 8.563 kb on - strand, within GFF4851

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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6,471 + GFF4846 0.82 +1.4
6,471 + GFF4846 0.82 -0.3
6,471 + GFF4846 0.82 -0.6
6,472 - GFF4846 0.82 +1.4
6,472 - GFF4846 0.82 -0.9
6,660 - -1.3
6,841 + GFF4847 0.19 -2.2
6,841 + GFF4847 0.19 +0.4
6,841 + GFF4847 0.19 -0.1
6,841 + GFF4847 0.19 -0.5
6,842 - GFF4847 0.19 -0.2
6,842 - GFF4847 0.19 -1.7
6,967 + GFF4847 0.51 -0.2
6,967 + GFF4847 0.51 +0.2
6,967 + GFF4847 0.51 -1.7
6,967 + GFF4847 0.51 -0.1
6,968 - GFF4847 0.51 -0.2
6,968 - GFF4847 0.51 +0.7
6,968 - GFF4847 0.51 -1.1
6,968 - GFF4847 0.51 -0.9
6,968 - GFF4847 0.51 +0.3
6,968 - GFF4847 0.51 -0.5
6,968 - GFF4847 0.51 +0.1
6,968 - GFF4847 0.51 +0.7
6,968 - GFF4847 0.51 +0.0
7,019 + GFF4847 0.64 -0.5
7,020 + GFF4847 0.64 +0.2
7,166 + +0.9
7,167 - +0.5
7,309 + GFF4848 0.29 +0.6
7,309 + GFF4848 0.29 +0.7
7,310 - GFF4848 0.30 -2.6
7,311 + GFF4848 0.30 -0.2
7,311 + GFF4848 0.30 +0.4
7,311 + GFF4848 0.30 +0.1
7,311 + GFF4848 0.30 -0.5
7,311 + GFF4848 0.30 +1.1
7,312 - GFF4848 0.30 +0.3
7,695 - GFF4849 0.17 +0.4
7,889 + +0.3
7,889 + +0.1
7,890 - +0.5
7,926 + GFF4850 0.14 +0.4
7,926 + GFF4850 0.14 +0.1
7,974 + GFF4850 0.30 -0.2
7,975 - GFF4850 0.31 +0.5
7,975 - GFF4850 0.31 -1.2
7,976 - GFF4850 0.31 -0.0
8,261 + -0.5
8,261 + -1.0
8,261 + -0.8
8,261 + +0.4
8,262 - -0.8
8,262 - -0.8
8,262 - -0.8
8,516 - GFF4851 0.42 +0.1
8,528 + GFF4851 0.44 -0.0
8,528 + GFF4851 0.44 -0.6
8,528 + GFF4851 0.44 -1.4
8,529 - GFF4851 0.44 +0.4
8,563 - GFF4851 0.49 +0.5

Or see this region's nucleotide sequence