Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4839 and GFF4840 are separated by 112 nucleotides GFF4840 and GFF4841 are separated by 37 nucleotides GFF4841 and GFF4842 are separated by 116 nucleotides
GFF4839 - Carnitine monooxygenase oxygenase subunit, at 79,153 to 80,328
GFF4839
GFF4840 - Camphor 5-monooxygenase, at 80,441 to 81,682
GFF4840
GFF4841 - Chloroacetanilide N-alkylformylase 2, ferredoxin component, at 81,720 to 82,043
GFF4841
GFF4842 - Putative cytochrome P450 143, at 82,160 to 83,350
GFF4842
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.543 kb on + strand, within GFF4839 at 79.581 kb on - strand, within GFF4839 at 79.748 kb on + strand, within GFF4839 at 79.837 kb on + strand, within GFF4839 at 79.837 kb on + strand, within GFF4839 at 79.837 kb on + strand, within GFF4839 at 79.837 kb on + strand, within GFF4839 at 79.838 kb on - strand, within GFF4839 at 80.008 kb on + strand, within GFF4839 at 80.008 kb on + strand, within GFF4839 at 80.009 kb on - strand, within GFF4839 at 80.009 kb on - strand, within GFF4839 at 80.009 kb on - strand, within GFF4839 at 80.050 kb on + strand, within GFF4839 at 80.050 kb on + strand, within GFF4839 at 80.051 kb on - strand, within GFF4839 at 80.051 kb on - strand, within GFF4839 at 80.051 kb on - strand, within GFF4839 at 80.051 kb on - strand, within GFF4839 at 80.051 kb on - strand, within GFF4839 at 80.052 kb on + strand, within GFF4839 at 80.053 kb on - strand, within GFF4839 at 80.053 kb on - strand, within GFF4839 at 80.104 kb on + strand, within GFF4839 at 80.105 kb on - strand, within GFF4839 at 80.108 kb on - strand, within GFF4839 at 80.108 kb on - strand, within GFF4839 at 80.108 kb on - strand, within GFF4839 at 80.440 kb on + strand at 80.440 kb on + strand at 80.477 kb on + strand at 80.478 kb on - strand at 80.514 kb on - strand at 80.514 kb on - strand at 80.515 kb on + strand at 80.552 kb on + strand at 80.552 kb on + strand at 80.552 kb on + strand at 80.553 kb on - strand at 80.553 kb on - strand at 80.588 kb on + strand, within GFF4840 at 80.588 kb on + strand, within GFF4840 at 80.588 kb on + strand, within GFF4840 at 80.588 kb on + strand, within GFF4840 at 80.588 kb on + strand, within GFF4840 at 80.588 kb on + strand, within GFF4840 at 80.589 kb on - strand, within GFF4840 at 80.589 kb on - strand, within GFF4840 at 80.617 kb on + strand, within GFF4840 at 80.618 kb on - strand, within GFF4840 at 80.618 kb on - strand, within GFF4840 at 80.708 kb on + strand, within GFF4840 at 80.708 kb on + strand, within GFF4840 at 80.708 kb on + strand, within GFF4840 at 80.708 kb on + strand, within GFF4840 at 80.709 kb on - strand, within GFF4840 at 80.754 kb on - strand, within GFF4840 at 80.972 kb on + strand, within GFF4840 at 80.973 kb on - strand, within GFF4840 at 80.973 kb on - strand, within GFF4840 at 80.973 kb on - strand, within GFF4840 at 81.200 kb on + strand, within GFF4840 at 81.262 kb on + strand, within GFF4840 at 81.263 kb on - strand, within GFF4840 at 81.263 kb on - strand, within GFF4840 at 81.297 kb on - strand, within GFF4840 at 81.297 kb on - strand, within GFF4840 at 81.473 kb on + strand, within GFF4840 at 81.488 kb on - strand, within GFF4840 at 81.488 kb on - strand, within GFF4840 at 81.488 kb on - strand, within GFF4840 at 81.883 kb on + strand, within GFF4841 at 81.883 kb on + strand, within GFF4841 at 81.884 kb on - strand, within GFF4841 at 81.884 kb on - strand, within GFF4841 at 81.884 kb on - strand, within GFF4841 at 82.042 kb on - strand at 82.079 kb on + strand at 82.191 kb on - strand at 82.191 kb on - strand at 82.192 kb on + strand at 82.289 kb on + strand, within GFF4842 at 82.289 kb on + strand, within GFF4842 at 82.442 kb on + strand, within GFF4842 at 82.442 kb on + strand, within GFF4842
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 79,543 + GFF4839 0.33 +0.7 79,581 - GFF4839 0.36 -0.4 79,748 + GFF4839 0.51 -0.9 79,837 + GFF4839 0.58 -0.8 79,837 + GFF4839 0.58 -0.7 79,837 + GFF4839 0.58 -0.5 79,837 + GFF4839 0.58 -0.7 79,838 - GFF4839 0.58 -0.1 80,008 + GFF4839 0.73 +0.3 80,008 + GFF4839 0.73 -0.3 80,009 - GFF4839 0.73 -0.2 80,009 - GFF4839 0.73 -0.3 80,009 - GFF4839 0.73 +0.4 80,050 + GFF4839 0.76 +0.0 80,050 + GFF4839 0.76 +0.3 80,051 - GFF4839 0.76 +0.9 80,051 - GFF4839 0.76 +1.3 80,051 - GFF4839 0.76 -0.0 80,051 - GFF4839 0.76 -1.5 80,051 - GFF4839 0.76 +0.8 80,052 + GFF4839 0.76 -0.0 80,053 - GFF4839 0.77 -1.1 80,053 - GFF4839 0.77 -0.9 80,104 + GFF4839 0.81 -0.1 80,105 - GFF4839 0.81 -1.2 80,108 - GFF4839 0.81 +0.3 80,108 - GFF4839 0.81 -0.5 80,108 - GFF4839 0.81 +1.9 80,440 + +1.1 80,440 + +0.6 80,477 + +1.1 80,478 - -2.3 80,514 - -0.5 80,514 - -0.0 80,515 + -0.6 80,552 + +0.1 80,552 + +0.2 80,552 + -1.2 80,553 - -0.2 80,553 - -0.9 80,588 + GFF4840 0.12 -0.5 80,588 + GFF4840 0.12 -0.7 80,588 + GFF4840 0.12 +0.2 80,588 + GFF4840 0.12 +0.4 80,588 + GFF4840 0.12 +0.7 80,588 + GFF4840 0.12 +0.5 80,589 - GFF4840 0.12 +0.1 80,589 - GFF4840 0.12 -0.4 80,617 + GFF4840 0.14 -0.5 80,618 - GFF4840 0.14 +0.4 80,618 - GFF4840 0.14 +0.7 80,708 + GFF4840 0.21 -0.2 80,708 + GFF4840 0.21 -1.0 80,708 + GFF4840 0.21 -0.0 80,708 + GFF4840 0.21 -0.2 80,709 - GFF4840 0.22 +0.3 80,754 - GFF4840 0.25 -0.5 80,972 + GFF4840 0.43 +0.7 80,973 - GFF4840 0.43 -1.9 80,973 - GFF4840 0.43 +1.6 80,973 - GFF4840 0.43 -0.5 81,200 + GFF4840 0.61 +1.4 81,262 + GFF4840 0.66 -0.3 81,263 - GFF4840 0.66 +0.5 81,263 - GFF4840 0.66 -1.3 81,297 - GFF4840 0.69 -0.0 81,297 - GFF4840 0.69 -0.3 81,473 + GFF4840 0.83 +0.1 81,488 - GFF4840 0.84 +0.5 81,488 - GFF4840 0.84 -0.8 81,488 - GFF4840 0.84 -0.1 81,883 + GFF4841 0.50 -0.1 81,883 + GFF4841 0.50 +0.0 81,884 - GFF4841 0.51 -0.5 81,884 - GFF4841 0.51 +0.1 81,884 - GFF4841 0.51 +1.0 82,042 - +1.1 82,079 + -0.1 82,191 - -0.1 82,191 - -0.8 82,192 + -0.2 82,289 + GFF4842 0.11 +0.1 82,289 + GFF4842 0.11 -0.6 82,442 + GFF4842 0.24 +0.1 82,442 + GFF4842 0.24 +0.6
Or see this region's nucleotide sequence