Strain Fitness in Xanthobacter sp. DMC5 around GFF4835

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4834 and GFF4835 overlap by 8 nucleotidesGFF4835 and GFF4836 are separated by 44 nucleotides GFF4834 - Regulatory protein AtoC, at 73,943 to 75,337 GFF4834 GFF4835 - hypothetical protein, at 75,330 to 76,175 GFF4835 GFF4836 - Divalent metal cation transporter MntH, at 76,220 to 77,530 GFF4836 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.507 kb on + strand, within GFF4834at 74.507 kb on + strand, within GFF4834at 74.508 kb on - strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 75.012 kb on - strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.088 kb on - strand, within GFF4834at 75.166 kb on + strand, within GFF4834at 75.167 kb on - strand, within GFF4834at 75.199 kb on - strandat 75.335 kb on + strandat 75.335 kb on + strandat 75.336 kb on - strandat 75.336 kb on - strandat 75.517 kb on - strand, within GFF4835at 75.517 kb on - strand, within GFF4835at 75.747 kb on + strand, within GFF4835at 75.758 kb on - strand, within GFF4835at 75.918 kb on + strand, within GFF4835at 76.020 kb on + strand, within GFF4835at 76.021 kb on - strand, within GFF4835at 76.021 kb on - strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.028 kb on - strand, within GFF4835at 76.028 kb on - strand, within GFF4835at 76.053 kb on + strand, within GFF4835at 76.053 kb on + strand, within GFF4835at 76.054 kb on - strand, within GFF4835at 76.142 kb on - strandat 76.221 kb on + strandat 76.241 kb on - strandat 76.395 kb on + strand, within GFF4836at 76.395 kb on + strand, within GFF4836at 76.396 kb on - strand, within GFF4836at 76.396 kb on - strand, within GFF4836at 76.396 kb on - strand, within GFF4836at 76.425 kb on - strand, within GFF4836at 76.470 kb on + strand, within GFF4836at 76.470 kb on + strand, within GFF4836at 76.471 kb on - strand, within GFF4836at 76.471 kb on - strand, within GFF4836at 76.471 kb on - strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.672 kb on - strand, within GFF4836at 76.672 kb on - strand, within GFF4836at 76.875 kb on + strand, within GFF4836at 76.875 kb on + strand, within GFF4836at 76.876 kb on - strand, within GFF4836at 77.058 kb on + strand, within GFF4836at 77.058 kb on + strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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74,507 + GFF4834 0.40 +0.5
74,507 + GFF4834 0.40 +0.2
74,508 - GFF4834 0.41 +0.4
74,852 + GFF4834 0.65 +1.0
74,852 + GFF4834 0.65 +0.8
74,852 + GFF4834 0.65 -0.0
74,853 - GFF4834 0.65 -0.1
74,853 - GFF4834 0.65 -0.9
74,853 - GFF4834 0.65 -0.4
74,853 - GFF4834 0.65 +0.3
75,012 - GFF4834 0.77 -0.0
75,087 + GFF4834 0.82 -0.3
75,087 + GFF4834 0.82 +0.3
75,087 + GFF4834 0.82 +0.2
75,087 + GFF4834 0.82 +0.3
75,087 + GFF4834 0.82 +1.2
75,088 - GFF4834 0.82 +0.5
75,166 + GFF4834 0.88 +0.0
75,167 - GFF4834 0.88 -0.3
75,199 - +0.1
75,335 + -0.6
75,335 + +0.4
75,336 - -0.7
75,336 - +0.2
75,517 - GFF4835 0.22 -0.7
75,517 - GFF4835 0.22 -0.7
75,747 + GFF4835 0.49 +0.2
75,758 - GFF4835 0.51 +0.2
75,918 + GFF4835 0.70 -0.5
76,020 + GFF4835 0.82 -0.7
76,021 - GFF4835 0.82 -1.7
76,021 - GFF4835 0.82 +0.3
76,027 + GFF4835 0.82 -0.1
76,027 + GFF4835 0.82 +0.7
76,027 + GFF4835 0.82 -1.9
76,028 - GFF4835 0.83 -0.5
76,028 - GFF4835 0.83 +0.3
76,053 + GFF4835 0.85 +0.2
76,053 + GFF4835 0.85 +1.7
76,054 - GFF4835 0.86 +0.3
76,142 - -1.1
76,221 + +0.4
76,241 - +0.1
76,395 + GFF4836 0.13 +0.4
76,395 + GFF4836 0.13 -0.5
76,396 - GFF4836 0.13 -0.0
76,396 - GFF4836 0.13 -0.1
76,396 - GFF4836 0.13 -1.9
76,425 - GFF4836 0.16 -1.3
76,470 + GFF4836 0.19 -0.0
76,470 + GFF4836 0.19 -0.1
76,471 - GFF4836 0.19 -0.5
76,471 - GFF4836 0.19 +0.9
76,471 - GFF4836 0.19 -1.8
76,539 + GFF4836 0.24 +0.2
76,539 + GFF4836 0.24 -1.0
76,539 + GFF4836 0.24 +0.2
76,539 + GFF4836 0.24 +1.1
76,539 + GFF4836 0.24 -0.6
76,672 - GFF4836 0.34 +1.0
76,672 - GFF4836 0.34 +0.2
76,875 + GFF4836 0.50 +0.4
76,875 + GFF4836 0.50 -0.7
76,876 - GFF4836 0.50 +2.0
77,058 + GFF4836 0.64 +0.7
77,058 + GFF4836 0.64 -0.3
77,059 - GFF4836 0.64 -1.1
77,059 - GFF4836 0.64 +0.8
77,059 - GFF4836 0.64 +1.5
77,109 + GFF4836 0.68 -0.6
77,109 + GFF4836 0.68 +0.2
77,109 + GFF4836 0.68 +1.0
77,109 + GFF4836 0.68 +0.3
77,109 + GFF4836 0.68 -1.9
77,109 + GFF4836 0.68 -0.1
77,109 + GFF4836 0.68 -0.1
77,110 - GFF4836 0.68 +0.4
77,110 - GFF4836 0.68 -0.1
77,110 - GFF4836 0.68 -0.4
77,110 - GFF4836 0.68 +1.6
77,110 - GFF4836 0.68 -0.7
77,110 - GFF4836 0.68 -1.0

Or see this region's nucleotide sequence