Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4819 and GFF4820 are separated by 537 nucleotides GFF4820 and GFF4821 are separated by 10 nucleotides GFF4821 and GFF4822 are separated by 203 nucleotides GFF4822 and GFF4823 are separated by 227 nucleotides
GFF4819 - Tyrosine recombinase XerC, at 60,315 to 61,586
GFF4819
GFF4820 - hypothetical protein, at 62,124 to 62,234
GFF4820
GFF4821 - hypothetical protein, at 62,245 to 62,673
GFF4821
GFF4822 - hypothetical protein, at 62,877 to 63,263
GFF4822
GFF4823 - hypothetical protein, at 63,491 to 64,423
GFF4823
Position (kb) 62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.264 kb on + strand, within GFF4819 at 61.264 kb on + strand, within GFF4819 at 61.400 kb on - strand, within GFF4819 at 61.611 kb on + strand at 61.611 kb on + strand at 61.612 kb on - strand at 61.612 kb on - strand at 61.612 kb on - strand at 61.694 kb on - strand at 61.694 kb on - strand at 61.706 kb on + strand at 61.707 kb on - strand at 61.902 kb on + strand at 61.938 kb on + strand at 62.166 kb on + strand, within GFF4820 at 62.167 kb on - strand, within GFF4820 at 62.167 kb on - strand, within GFF4820 at 62.167 kb on - strand, within GFF4820 at 62.167 kb on - strand, within GFF4820 at 62.200 kb on + strand, within GFF4820 at 62.206 kb on + strand, within GFF4820 at 62.206 kb on + strand, within GFF4820 at 62.206 kb on + strand, within GFF4820 at 62.207 kb on - strand, within GFF4820 at 62.207 kb on - strand, within GFF4820 at 62.212 kb on - strand, within GFF4820 at 62.212 kb on - strand, within GFF4820 at 62.212 kb on - strand, within GFF4820 at 62.212 kb on - strand, within GFF4820 at 62.212 kb on - strand, within GFF4820 at 62.220 kb on + strand, within GFF4820 at 62.221 kb on - strand, within GFF4820 at 62.270 kb on + strand at 62.312 kb on - strand, within GFF4821 at 62.312 kb on - strand, within GFF4821 at 62.413 kb on + strand, within GFF4821 at 62.413 kb on + strand, within GFF4821 at 62.413 kb on + strand, within GFF4821 at 62.414 kb on - strand, within GFF4821 at 62.414 kb on - strand, within GFF4821 at 62.477 kb on - strand, within GFF4821 at 62.671 kb on + strand at 62.672 kb on - strand at 62.672 kb on - strand at 62.672 kb on - strand at 62.828 kb on + strand at 62.828 kb on + strand at 62.829 kb on - strand at 62.883 kb on + strand at 62.883 kb on + strand at 62.883 kb on + strand at 62.883 kb on + strand at 62.884 kb on - strand at 62.884 kb on - strand at 63.078 kb on + strand, within GFF4822 at 63.078 kb on + strand, within GFF4822 at 63.078 kb on + strand, within GFF4822 at 63.078 kb on + strand, within GFF4822 at 63.078 kb on + strand, within GFF4822 at 63.079 kb on - strand, within GFF4822 at 63.121 kb on - strand, within GFF4822 at 63.121 kb on - strand, within GFF4822 at 63.160 kb on - strand, within GFF4822 at 63.174 kb on + strand, within GFF4822 at 63.174 kb on + strand, within GFF4822 at 63.177 kb on - strand, within GFF4822 at 63.262 kb on - strand at 63.349 kb on + strand at 63.349 kb on + strand at 63.350 kb on - strand at 63.350 kb on - strand at 63.351 kb on + strand at 63.352 kb on - strand at 63.352 kb on - strand at 63.352 kb on - strand at 63.352 kb on - strand at 63.404 kb on + strand at 63.404 kb on + strand at 63.492 kb on + strand at 63.492 kb on + strand at 63.493 kb on - strand at 63.528 kb on - strand at 63.555 kb on + strand at 63.555 kb on + strand at 63.556 kb on - strand at 63.556 kb on - strand at 63.639 kb on + strand, within GFF4823 at 63.639 kb on + strand, within GFF4823 at 63.639 kb on + strand, within GFF4823 at 63.639 kb on + strand, within GFF4823 at 63.639 kb on + strand, within GFF4823 at 63.639 kb on + strand, within GFF4823 at 63.640 kb on - strand, within GFF4823 at 63.640 kb on - strand, within GFF4823 at 63.640 kb on - strand, within GFF4823 at 63.640 kb on - strand, within GFF4823 at 63.640 kb on - strand, within GFF4823 at 63.644 kb on - strand, within GFF4823
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 61,264 + GFF4819 0.75 +0.1 61,264 + GFF4819 0.75 -1.1 61,400 - GFF4819 0.85 -0.3 61,611 + -0.3 61,611 + -0.3 61,612 - +1.2 61,612 - +0.3 61,612 - -0.6 61,694 - -0.0 61,694 - +1.5 61,706 + -0.4 61,707 - +0.3 61,902 + -0.2 61,938 + -0.5 62,166 + GFF4820 0.38 -0.1 62,167 - GFF4820 0.39 +0.6 62,167 - GFF4820 0.39 +1.1 62,167 - GFF4820 0.39 -0.3 62,167 - GFF4820 0.39 +1.1 62,200 + GFF4820 0.68 +0.9 62,206 + GFF4820 0.74 +1.0 62,206 + GFF4820 0.74 -0.6 62,206 + GFF4820 0.74 -0.1 62,207 - GFF4820 0.75 -0.3 62,207 - GFF4820 0.75 -1.5 62,212 - GFF4820 0.79 +0.2 62,212 - GFF4820 0.79 -1.0 62,212 - GFF4820 0.79 -0.9 62,212 - GFF4820 0.79 -0.6 62,212 - GFF4820 0.79 +0.5 62,220 + GFF4820 0.86 -1.0 62,221 - GFF4820 0.87 -0.5 62,270 + +0.5 62,312 - GFF4821 0.16 +1.9 62,312 - GFF4821 0.16 +1.3 62,413 + GFF4821 0.39 -0.2 62,413 + GFF4821 0.39 +0.5 62,413 + GFF4821 0.39 +0.4 62,414 - GFF4821 0.39 -1.1 62,414 - GFF4821 0.39 +0.2 62,477 - GFF4821 0.54 +1.4 62,671 + +0.9 62,672 - -1.2 62,672 - +0.2 62,672 - -0.4 62,828 + -0.3 62,828 + -0.9 62,829 - +0.7 62,883 + +0.3 62,883 + +0.8 62,883 + +0.7 62,883 + -0.1 62,884 - -0.7 62,884 - +0.2 63,078 + GFF4822 0.52 -0.3 63,078 + GFF4822 0.52 +0.4 63,078 + GFF4822 0.52 +0.6 63,078 + GFF4822 0.52 -0.3 63,078 + GFF4822 0.52 +0.3 63,079 - GFF4822 0.52 +0.4 63,121 - GFF4822 0.63 -0.1 63,121 - GFF4822 0.63 -1.7 63,160 - GFF4822 0.73 -0.3 63,174 + GFF4822 0.77 -1.1 63,174 + GFF4822 0.77 -0.7 63,177 - GFF4822 0.78 +0.1 63,262 - -1.1 63,349 + +1.4 63,349 + +0.6 63,350 - -2.2 63,350 - -0.6 63,351 + +1.5 63,352 - +0.2 63,352 - -0.1 63,352 - -0.6 63,352 - +0.8 63,404 + +1.1 63,404 + +0.1 63,492 + +0.8 63,492 + -0.1 63,493 - -0.3 63,528 - +0.7 63,555 + +0.4 63,555 + -0.3 63,556 - +0.4 63,556 - -0.9 63,639 + GFF4823 0.16 +0.1 63,639 + GFF4823 0.16 +0.9 63,639 + GFF4823 0.16 -0.1 63,639 + GFF4823 0.16 +0.4 63,639 + GFF4823 0.16 +1.2 63,639 + GFF4823 0.16 -0.5 63,640 - GFF4823 0.16 -0.6 63,640 - GFF4823 0.16 +1.5 63,640 - GFF4823 0.16 -1.1 63,640 - GFF4823 0.16 +1.8 63,640 - GFF4823 0.16 -0.1 63,644 - GFF4823 0.16 +0.3
Or see this region's nucleotide sequence