Strain Fitness in Xanthobacter sp. DMC5 around GFF4818

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4817 and GFF4818 are separated by 6 nucleotidesGFF4818 and GFF4819 are separated by 627 nucleotides GFF4817 - putative acetyl-CoA acyltransferase, at 57,231 to 58,427 GFF4817 GFF4818 - Butyryl-CoA:acetate CoA-transferase, at 58,434 to 59,687 GFF4818 GFF4819 - Tyrosine recombinase XerC, at 60,315 to 61,586 GFF4819 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2at 57.590 kb on + strand, within GFF4817at 57.591 kb on - strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.777 kb on + strand, within GFF4817at 57.777 kb on + strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 58.362 kb on + strandat 58.363 kb on - strandat 58.607 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.716 kb on + strand, within GFF4818at 58.716 kb on + strand, within GFF4818at 58.716 kb on + strand, within GFF4818at 58.717 kb on - strand, within GFF4818at 58.762 kb on + strand, within GFF4818at 58.762 kb on + strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.821 kb on + strand, within GFF4818at 58.821 kb on + strand, within GFF4818at 58.822 kb on - strand, within GFF4818at 58.822 kb on - strand, within GFF4818at 58.917 kb on + strand, within GFF4818at 58.917 kb on + strand, within GFF4818at 58.957 kb on + strand, within GFF4818at 58.957 kb on + strand, within GFF4818at 58.958 kb on - strand, within GFF4818at 58.977 kb on - strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.209 kb on + strand, within GFF4818at 59.209 kb on + strand, within GFF4818at 59.210 kb on - strand, within GFF4818at 59.210 kb on - strand, within GFF4818at 59.385 kb on + strand, within GFF4818at 59.385 kb on + strand, within GFF4818at 59.386 kb on - strand, within GFF4818at 59.387 kb on + strand, within GFF4818at 59.388 kb on - strand, within GFF4818at 59.507 kb on + strand, within GFF4818at 59.507 kb on + strand, within GFF4818at 59.508 kb on - strand, within GFF4818at 59.555 kb on + strand, within GFF4818at 59.556 kb on - strand, within GFF4818at 59.686 kb on - strandat 59.686 kb on - strandat 59.697 kb on - strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.842 kb on - strandat 59.864 kb on + strandat 59.948 kb on + strandat 59.949 kb on - strandat 60.004 kb on + strandat 60.005 kb on - strandat 60.005 kb on - strandat 60.009 kb on + strandat 60.026 kb on - strandat 60.026 kb on - strandat 60.068 kb on + strandat 60.069 kb on - strandat 60.124 kb on + strandat 60.124 kb on + strandat 60.124 kb on + strandat 60.125 kb on - strandat 60.125 kb on - strandat 60.129 kb on + strandat 60.129 kb on + strandat 60.129 kb on + strandat 60.129 kb on + strandat 60.130 kb on - strandat 60.130 kb on - strandat 60.133 kb on - strandat 60.230 kb on - strandat 60.263 kb on - strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.366 kb on + strandat 60.367 kb on - strandat 60.367 kb on - strandat 60.430 kb on + strandat 60.430 kb on + strandat 60.431 kb on - strandat 60.477 kb on - strand, within GFF4819at 60.480 kb on + strand, within GFF4819at 60.480 kb on + strand, within GFF4819at 60.481 kb on - strand, within GFF4819at 60.507 kb on + strand, within GFF4819at 60.507 kb on + strand, within GFF4819at 60.508 kb on - strand, within GFF4819at 60.508 kb on - strand, within GFF4819at 60.533 kb on + strand, within GFF4819at 60.533 kb on + strand, within GFF4819at 60.533 kb on + strand, within GFF4819at 60.534 kb on - strand, within GFF4819at 60.534 kb on - strand, within GFF4819at 60.534 kb on - strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.615 kb on + strand, within GFF4819

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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57,590 + GFF4817 0.30 -1.2
57,591 - GFF4817 0.30 +0.4
57,600 + GFF4817 0.31 -0.5
57,600 + GFF4817 0.31 -0.1
57,600 + GFF4817 0.31 -1.0
57,601 - GFF4817 0.31 +1.1
57,601 - GFF4817 0.31 +0.0
57,601 - GFF4817 0.31 +0.1
57,601 - GFF4817 0.31 -0.6
57,601 - GFF4817 0.31 +0.3
57,649 - GFF4817 0.35 +0.2
57,649 - GFF4817 0.35 -0.5
57,649 - GFF4817 0.35 -2.0
57,649 - GFF4817 0.35 -0.6
57,649 - GFF4817 0.35 +0.6
57,747 + GFF4817 0.43 -1.2
57,747 + GFF4817 0.43 +0.6
57,747 + GFF4817 0.43 +0.2
57,748 - GFF4817 0.43 -1.0
57,748 - GFF4817 0.43 +0.3
57,748 - GFF4817 0.43 -0.1
57,752 + GFF4817 0.44 -0.3
57,752 + GFF4817 0.44 -0.9
57,752 + GFF4817 0.44 +0.4
57,752 + GFF4817 0.44 -1.2
57,752 + GFF4817 0.44 +0.5
57,752 + GFF4817 0.44 +2.7
57,753 - GFF4817 0.44 -0.2
57,753 - GFF4817 0.44 -0.5
57,753 - GFF4817 0.44 +0.1
57,753 - GFF4817 0.44 -0.7
57,753 - GFF4817 0.44 +1.3
57,753 - GFF4817 0.44 +1.6
57,777 + GFF4817 0.46 -0.7
57,777 + GFF4817 0.46 +0.1
57,778 - GFF4817 0.46 +0.4
57,778 - GFF4817 0.46 +1.7
57,778 - GFF4817 0.46 +1.1
57,778 - GFF4817 0.46 -1.6
58,362 + -0.3
58,363 - -0.1
58,607 + GFF4818 0.14 +0.3
58,636 + GFF4818 0.16 +0.7
58,636 + GFF4818 0.16 -0.8
58,636 + GFF4818 0.16 +0.9
58,636 + GFF4818 0.16 -0.8
58,636 + GFF4818 0.16 +0.7
58,636 + GFF4818 0.16 -0.9
58,636 + GFF4818 0.16 -0.5
58,637 - GFF4818 0.16 -0.6
58,637 - GFF4818 0.16 +0.4
58,637 - GFF4818 0.16 +1.4
58,637 - GFF4818 0.16 +0.6
58,637 - GFF4818 0.16 -0.9
58,637 - GFF4818 0.16 -0.6
58,637 - GFF4818 0.16 -0.3
58,716 + GFF4818 0.22 +1.1
58,716 + GFF4818 0.22 +0.3
58,716 + GFF4818 0.22 -0.9
58,717 - GFF4818 0.23 -0.6
58,762 + GFF4818 0.26 +0.7
58,762 + GFF4818 0.26 -0.5
58,763 - GFF4818 0.26 -1.3
58,763 - GFF4818 0.26 +1.1
58,763 - GFF4818 0.26 -2.5
58,763 - GFF4818 0.26 +0.2
58,763 - GFF4818 0.26 -0.6
58,763 - GFF4818 0.26 -1.5
58,821 + GFF4818 0.31 -0.3
58,821 + GFF4818 0.31 -0.0
58,822 - GFF4818 0.31 -1.1
58,822 - GFF4818 0.31 -0.1
58,917 + GFF4818 0.39 +1.7
58,917 + GFF4818 0.39 +0.4
58,957 + GFF4818 0.42 -1.2
58,957 + GFF4818 0.42 -0.3
58,958 - GFF4818 0.42 -1.1
58,977 - GFF4818 0.43 -0.5
59,095 + GFF4818 0.53 -0.4
59,095 + GFF4818 0.53 +0.7
59,095 + GFF4818 0.53 +0.1
59,095 + GFF4818 0.53 -0.3
59,095 + GFF4818 0.53 -1.3
59,096 - GFF4818 0.53 +1.3
59,096 - GFF4818 0.53 -0.2
59,096 - GFF4818 0.53 +0.8
59,096 - GFF4818 0.53 +0.7
59,209 + GFF4818 0.62 -0.2
59,209 + GFF4818 0.62 -0.2
59,210 - GFF4818 0.62 -0.7
59,210 - GFF4818 0.62 -0.9
59,385 + GFF4818 0.76 -0.4
59,385 + GFF4818 0.76 +1.8
59,386 - GFF4818 0.76 -0.1
59,387 + GFF4818 0.76 -0.9
59,388 - GFF4818 0.76 -0.0
59,507 + GFF4818 0.86 -0.1
59,507 + GFF4818 0.86 +0.5
59,508 - GFF4818 0.86 +1.5
59,555 + GFF4818 0.89 +0.6
59,556 - GFF4818 0.89 -0.7
59,686 - -0.4
59,686 - -0.4
59,697 - -1.9
59,841 + +0.3
59,841 + +0.3
59,841 + -0.8
59,841 + +1.0
59,841 + -0.6
59,841 + +1.1
59,842 - -0.1
59,864 + -0.2
59,948 + +0.7
59,949 - -0.0
60,004 + -0.3
60,005 - -1.6
60,005 - -0.4
60,009 + -0.0
60,026 - -0.9
60,026 - -1.0
60,068 + -0.1
60,069 - -1.5
60,124 + -0.9
60,124 + -0.5
60,124 + +0.7
60,125 - -1.2
60,125 - +1.9
60,129 + +1.0
60,129 + +0.2
60,129 + -1.7
60,129 + +0.4
60,130 - +1.0
60,130 - -0.1
60,133 - +0.2
60,230 - -0.6
60,263 - -0.3
60,316 + +0.1
60,316 + -2.1
60,316 + -0.7
60,316 + -0.9
60,316 + -1.2
60,316 + -0.9
60,316 + -0.8
60,316 + +0.2
60,316 + -0.0
60,316 + +0.7
60,317 - +0.1
60,317 - -0.2
60,317 - -0.9
60,317 - +0.1
60,317 - +0.5
60,317 - -0.4
60,366 + +0.3
60,367 - -0.3
60,367 - -0.3
60,430 + +0.1
60,430 + -1.1
60,431 - -0.5
60,477 - GFF4819 0.13 -0.4
60,480 + GFF4819 0.13 -0.0
60,480 + GFF4819 0.13 -0.2
60,481 - GFF4819 0.13 -0.1
60,507 + GFF4819 0.15 -0.9
60,507 + GFF4819 0.15 -0.1
60,508 - GFF4819 0.15 -1.0
60,508 - GFF4819 0.15 +0.3
60,533 + GFF4819 0.17 -1.1
60,533 + GFF4819 0.17 +1.1
60,533 + GFF4819 0.17 +0.6
60,534 - GFF4819 0.17 -1.3
60,534 - GFF4819 0.17 +1.5
60,534 - GFF4819 0.17 +0.1
60,615 + GFF4819 0.24 +0.6
60,615 + GFF4819 0.24 +0.4
60,615 + GFF4819 0.24 +0.3
60,615 + GFF4819 0.24 -0.6

Or see this region's nucleotide sequence