Strain Fitness in Xanthobacter sp. DMC5 around GFF4811

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4810 and GFF4811 are separated by 47 nucleotidesGFF4811 and GFF4812 are separated by 109 nucleotidesGFF4812 and GFF4813 overlap by 1 nucleotides GFF4810 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 50,777 to 51,991 GFF4810 GFF4811 - Succinyl-CoA--L-malate CoA-transferase beta subunit, at 52,039 to 53,286 GFF4811 GFF4812 - HTH-type transcriptional repressor AllR, at 53,396 to 54,244 GFF4812 GFF4813 - hypothetical protein, at 54,244 to 54,639 GFF4813 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.127 kb on + strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.127 kb on + strand, within GFF4810at 51.128 kb on - strand, within GFF4810at 51.128 kb on - strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.129 kb on + strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.130 kb on - strand, within GFF4810at 51.342 kb on + strand, within GFF4810at 51.343 kb on - strand, within GFF4810at 51.365 kb on + strand, within GFF4810at 51.366 kb on - strand, within GFF4810at 51.447 kb on + strand, within GFF4810at 51.447 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.651 kb on + strand, within GFF4810at 51.652 kb on - strand, within GFF4810at 51.652 kb on - strand, within GFF4810at 51.711 kb on + strand, within GFF4810at 51.711 kb on + strand, within GFF4810at 51.711 kb on + strand, within GFF4810at 51.712 kb on - strand, within GFF4810at 51.712 kb on - strand, within GFF4810at 51.723 kb on + strand, within GFF4810at 51.744 kb on + strand, within GFF4810at 51.744 kb on + strand, within GFF4810at 51.745 kb on - strand, within GFF4810at 51.764 kb on - strand, within GFF4810at 51.764 kb on - strand, within GFF4810at 51.824 kb on - strand, within GFF4810at 51.950 kb on - strandat 52.001 kb on - strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.040 kb on + strandat 52.041 kb on - strandat 52.041 kb on - strandat 52.111 kb on + strandat 52.111 kb on + strandat 52.111 kb on + strandat 52.112 kb on - strandat 52.112 kb on - strandat 52.122 kb on - strandat 52.125 kb on + strandat 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.727 kb on + strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.876 kb on - strand, within GFF4811at 52.876 kb on - strand, within GFF4811at 52.878 kb on + strand, within GFF4811at 52.879 kb on - strand, within GFF4811at 52.879 kb on - strand, within GFF4811at 52.907 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.055 kb on - strand, within GFF4811at 53.055 kb on - strand, within GFF4811at 53.055 kb on - strand, within GFF4811at 53.181 kb on + strandat 53.183 kb on + strandat 53.467 kb on - strandat 53.472 kb on - strandat 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.610 kb on - strand, within GFF4812at 53.617 kb on - strand, within GFF4812at 53.617 kb on - strand, within GFF4812at 53.629 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.953 kb on - strand, within GFF4812at 53.975 kb on + strand, within GFF4812at 54.254 kb on + strandat 54.254 kb on + strandat 54.254 kb on + strandat 54.255 kb on - strandat 54.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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51,127 + GFF4810 0.29 -0.3
51,127 + GFF4810 0.29 -0.8
51,127 + GFF4810 0.29 -0.7
51,128 - GFF4810 0.29 -1.2
51,128 - GFF4810 0.29 -1.5
51,129 + GFF4810 0.29 -0.2
51,129 + GFF4810 0.29 +0.6
51,129 + GFF4810 0.29 +0.1
51,129 + GFF4810 0.29 -1.7
51,129 + GFF4810 0.29 -0.3
51,129 + GFF4810 0.29 -0.6
51,129 + GFF4810 0.29 +0.7
51,129 + GFF4810 0.29 +0.3
51,130 - GFF4810 0.29 -0.2
51,130 - GFF4810 0.29 +1.7
51,130 - GFF4810 0.29 +2.1
51,342 + GFF4810 0.47 +0.5
51,343 - GFF4810 0.47 +0.8
51,365 + GFF4810 0.48 +0.1
51,366 - GFF4810 0.48 -0.5
51,447 + GFF4810 0.55 -1.1
51,447 + GFF4810 0.55 +0.2
51,651 + GFF4810 0.72 +0.6
51,651 + GFF4810 0.72 -0.5
51,651 + GFF4810 0.72 -0.3
51,652 - GFF4810 0.72 -0.1
51,652 - GFF4810 0.72 +1.0
51,711 + GFF4810 0.77 -1.2
51,711 + GFF4810 0.77 +0.2
51,711 + GFF4810 0.77 +1.9
51,712 - GFF4810 0.77 -1.1
51,712 - GFF4810 0.77 -0.5
51,723 + GFF4810 0.78 +0.3
51,744 + GFF4810 0.80 +0.1
51,744 + GFF4810 0.80 +1.0
51,745 - GFF4810 0.80 -0.0
51,764 - GFF4810 0.81 -0.4
51,764 - GFF4810 0.81 +0.4
51,824 - GFF4810 0.86 -2.0
51,950 - +1.1
52,001 - -0.8
52,040 + -0.5
52,040 + +1.1
52,040 + -0.0
52,040 + -0.0
52,040 + +0.2
52,041 - -2.0
52,041 - -0.5
52,111 + -0.0
52,111 + -1.8
52,111 + +0.0
52,112 - -0.1
52,112 - -1.6
52,122 - -0.0
52,125 + -0.3
52,407 + GFF4811 0.29 +0.2
52,407 + GFF4811 0.29 +1.1
52,407 + GFF4811 0.29 +0.7
52,407 + GFF4811 0.29 -0.5
52,408 - GFF4811 0.30 -0.4
52,408 - GFF4811 0.30 +0.7
52,408 - GFF4811 0.30 -0.3
52,408 - GFF4811 0.30 -0.3
52,611 + GFF4811 0.46 -0.8
52,611 + GFF4811 0.46 +0.2
52,611 + GFF4811 0.46 +1.6
52,611 + GFF4811 0.46 -1.8
52,727 + GFF4811 0.55 +0.2
52,728 - GFF4811 0.55 +0.2
52,728 - GFF4811 0.55 +0.4
52,728 - GFF4811 0.55 +1.0
52,728 - GFF4811 0.55 +0.4
52,736 + GFF4811 0.56 -0.7
52,736 + GFF4811 0.56 +0.4
52,736 + GFF4811 0.56 +0.9
52,736 + GFF4811 0.56 -0.2
52,736 + GFF4811 0.56 -0.5
52,737 - GFF4811 0.56 -0.9
52,737 - GFF4811 0.56 +2.3
52,737 - GFF4811 0.56 +0.7
52,737 - GFF4811 0.56 -0.8
52,737 - GFF4811 0.56 -0.6
52,737 - GFF4811 0.56 -1.0
52,875 + GFF4811 0.67 +1.0
52,875 + GFF4811 0.67 -1.0
52,875 + GFF4811 0.67 -0.2
52,876 - GFF4811 0.67 +0.1
52,876 - GFF4811 0.67 -0.5
52,878 + GFF4811 0.67 +0.8
52,879 - GFF4811 0.67 -0.2
52,879 - GFF4811 0.67 +1.1
52,907 + GFF4811 0.70 -0.1
53,054 + GFF4811 0.81 -0.1
53,054 + GFF4811 0.81 -0.1
53,054 + GFF4811 0.81 +1.0
53,054 + GFF4811 0.81 -2.1
53,054 + GFF4811 0.81 +0.3
53,054 + GFF4811 0.81 +0.1
53,055 - GFF4811 0.81 -0.5
53,055 - GFF4811 0.81 -0.3
53,055 - GFF4811 0.81 -0.5
53,181 + +0.1
53,183 + +0.7
53,467 - -0.4
53,472 - +0.7
53,609 + GFF4812 0.25 +0.7
53,609 + GFF4812 0.25 -1.3
53,609 + GFF4812 0.25 -2.1
53,609 + GFF4812 0.25 -0.9
53,609 + GFF4812 0.25 +1.2
53,610 - GFF4812 0.25 +1.0
53,617 - GFF4812 0.26 -1.1
53,617 - GFF4812 0.26 +1.3
53,629 - GFF4812 0.27 +2.0
53,853 - GFF4812 0.54 -1.9
53,853 - GFF4812 0.54 +0.1
53,853 - GFF4812 0.54 -0.0
53,952 + GFF4812 0.65 -0.6
53,952 + GFF4812 0.65 +1.9
53,952 + GFF4812 0.65 -0.5
53,952 + GFF4812 0.65 -0.4
53,952 + GFF4812 0.65 -0.5
53,953 - GFF4812 0.66 -0.0
53,975 + GFF4812 0.68 +0.4
54,254 + +0.3
54,254 + -0.9
54,254 + +0.0
54,255 - -1.1
54,255 - +0.6

Or see this region's nucleotide sequence