Strain Fitness in Xanthobacter sp. DMC5 around GFF4802

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4800 and GFF4801 are separated by 9 nucleotidesGFF4801 and GFF4802 are separated by 11 nucleotidesGFF4802 and GFF4803 are separated by 1 nucleotidesGFF4803 and GFF4804 are separated by 25 nucleotides GFF4800 - 3-hydroxyisobutyrate dehydrogenase, at 40,079 to 40,957 GFF4800 GFF4801 - 2-(R)-hydroxypropyl-CoM dehydrogenase, at 40,967 to 41,719 GFF4801 GFF4802 - Metal reductase, at 41,731 to 43,764 GFF4802 GFF4803 - Short-chain-enoyl-CoA hydratase, at 43,766 to 44,578 GFF4803 GFF4804 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 44,604 to 45,383 GFF4804 Position (kb) 41 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 40.897 kb on + strandat 40.898 kb on - strandat 40.901 kb on + strandat 40.901 kb on + strandat 40.902 kb on - strandat 40.902 kb on - strandat 40.902 kb on - strandat 41.040 kb on + strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.051 kb on - strand, within GFF4801at 41.051 kb on - strand, within GFF4801at 41.129 kb on + strand, within GFF4801at 41.129 kb on + strand, within GFF4801at 41.130 kb on - strand, within GFF4801at 41.130 kb on - strand, within GFF4801at 41.199 kb on + strand, within GFF4801at 41.199 kb on + strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.253 kb on + strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.370 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.644 kb on - strandat 41.668 kb on + strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.772 kb on + strandat 41.772 kb on + strandat 41.773 kb on - strandat 42.252 kb on - strand, within GFF4802at 42.257 kb on + strand, within GFF4802at 42.257 kb on + strand, within GFF4802at 42.258 kb on - strand, within GFF4802at 42.621 kb on + strand, within GFF4802at 42.621 kb on + strand, within GFF4802at 42.622 kb on - strand, within GFF4802at 42.680 kb on + strand, within GFF4802at 42.680 kb on + strand, within GFF4802at 42.680 kb on + strand, within GFF4802at 42.680 kb on + strand, within GFF4802at 42.681 kb on - strand, within GFF4802at 42.681 kb on - strand, within GFF4802at 42.682 kb on + strand, within GFF4802at 42.769 kb on - strand, within GFF4802at 42.816 kb on + strand, within GFF4802at 42.817 kb on - strand, within GFF4802at 42.817 kb on - strand, within GFF4802at 42.817 kb on - strand, within GFF4802at 42.838 kb on + strand, within GFF4802at 42.839 kb on - strand, within GFF4802at 42.839 kb on - strand, within GFF4802at 42.906 kb on + strand, within GFF4802at 42.906 kb on + strand, within GFF4802at 42.906 kb on + strand, within GFF4802at 42.907 kb on - strand, within GFF4802at 42.930 kb on - strand, within GFF4802at 42.963 kb on - strand, within GFF4802at 42.963 kb on - strand, within GFF4802at 42.963 kb on - strand, within GFF4802at 43.196 kb on + strand, within GFF4802at 43.197 kb on - strand, within GFF4802at 43.277 kb on + strand, within GFF4802at 43.278 kb on - strand, within GFF4802at 43.278 kb on - strand, within GFF4802at 43.368 kb on - strand, within GFF4802at 43.368 kb on - strand, within GFF4802at 43.466 kb on + strand, within GFF4802at 43.466 kb on + strand, within GFF4802at 43.626 kb on - strandat 43.695 kb on + strandat 43.696 kb on - strandat 43.748 kb on + strandat 43.748 kb on + strandat 43.748 kb on + strandat 43.749 kb on - strandat 43.820 kb on + strandat 43.964 kb on + strand, within GFF4803at 43.964 kb on + strand, within GFF4803at 43.964 kb on + strand, within GFF4803at 43.965 kb on - strand, within GFF4803at 43.965 kb on - strand, within GFF4803at 44.076 kb on + strand, within GFF4803at 44.076 kb on + strand, within GFF4803at 44.077 kb on - strand, within GFF4803at 44.077 kb on - strand, within GFF4803at 44.283 kb on + strand, within GFF4803at 44.283 kb on + strand, within GFF4803at 44.284 kb on - strand, within GFF4803at 44.348 kb on + strand, within GFF4803at 44.348 kb on + strand, within GFF4803at 44.349 kb on - strand, within GFF4803at 44.349 kb on - strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.562 kb on + strandat 44.563 kb on - strandat 44.563 kb on - strandat 44.662 kb on + strandat 44.662 kb on + strandat 44.663 kb on - strandat 44.663 kb on - strandat 44.738 kb on - strand, within GFF4804at 44.756 kb on + strand, within GFF4804at 44.756 kb on + strand, within GFF4804at 44.757 kb on - strand, within GFF4804at 44.758 kb on + strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.759 kb on - strand, within GFF4804

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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40,897 + -0.3
40,898 - -0.6
40,901 + -1.2
40,901 + -0.8
40,902 - -0.1
40,902 - -0.4
40,902 - +2.3
41,040 + -0.6
41,041 - +0.9
41,041 - -0.2
41,041 - -0.8
41,041 - +1.0
41,041 - -1.1
41,041 - -0.7
41,041 - +1.0
41,041 - +0.7
41,051 - GFF4801 0.11 -1.1
41,051 - GFF4801 0.11 -1.7
41,129 + GFF4801 0.22 +1.3
41,129 + GFF4801 0.22 +0.9
41,130 - GFF4801 0.22 -1.3
41,130 - GFF4801 0.22 +1.3
41,199 + GFF4801 0.31 +0.9
41,199 + GFF4801 0.31 +0.6
41,200 - GFF4801 0.31 -0.1
41,200 - GFF4801 0.31 -0.4
41,200 - GFF4801 0.31 -1.4
41,200 - GFF4801 0.31 +1.7
41,200 - GFF4801 0.31 -1.1
41,253 + GFF4801 0.38 +0.7
41,254 - GFF4801 0.38 -0.6
41,254 - GFF4801 0.38 -0.8
41,254 - GFF4801 0.38 +0.9
41,254 - GFF4801 0.38 +0.4
41,370 + GFF4801 0.54 +1.1
41,643 + GFF4801 0.90 +2.0
41,643 + GFF4801 0.90 +0.5
41,643 + GFF4801 0.90 +0.5
41,643 + GFF4801 0.90 -0.5
41,643 + GFF4801 0.90 +0.5
41,644 - -0.2
41,668 + +0.0
41,724 - +0.3
41,724 - +0.7
41,724 - -0.9
41,724 - -1.1
41,724 - +1.3
41,772 + +0.5
41,772 + -1.3
41,773 - -0.6
42,252 - GFF4802 0.26 -0.2
42,257 + GFF4802 0.26 +0.5
42,257 + GFF4802 0.26 -1.0
42,258 - GFF4802 0.26 -0.7
42,621 + GFF4802 0.44 -1.4
42,621 + GFF4802 0.44 -1.1
42,622 - GFF4802 0.44 +0.4
42,680 + GFF4802 0.47 +1.4
42,680 + GFF4802 0.47 -2.0
42,680 + GFF4802 0.47 +0.2
42,680 + GFF4802 0.47 +0.5
42,681 - GFF4802 0.47 -1.4
42,681 - GFF4802 0.47 -0.6
42,682 + GFF4802 0.47 +0.5
42,769 - GFF4802 0.51 -0.4
42,816 + GFF4802 0.53 -0.1
42,817 - GFF4802 0.53 +0.5
42,817 - GFF4802 0.53 -0.5
42,817 - GFF4802 0.53 -1.0
42,838 + GFF4802 0.54 +0.4
42,839 - GFF4802 0.54 -1.1
42,839 - GFF4802 0.54 -0.7
42,906 + GFF4802 0.58 -0.1
42,906 + GFF4802 0.58 -0.3
42,906 + GFF4802 0.58 -1.8
42,907 - GFF4802 0.58 +1.2
42,930 - GFF4802 0.59 -1.1
42,963 - GFF4802 0.61 -1.0
42,963 - GFF4802 0.61 -0.6
42,963 - GFF4802 0.61 -0.0
43,196 + GFF4802 0.72 -0.3
43,197 - GFF4802 0.72 +0.9
43,277 + GFF4802 0.76 +0.4
43,278 - GFF4802 0.76 +0.4
43,278 - GFF4802 0.76 +1.3
43,368 - GFF4802 0.80 +0.1
43,368 - GFF4802 0.80 +0.3
43,466 + GFF4802 0.85 -2.3
43,466 + GFF4802 0.85 +0.4
43,626 - +0.7
43,695 + -0.2
43,696 - -0.4
43,748 + +0.4
43,748 + -0.5
43,748 + +0.7
43,749 - +0.5
43,820 + +0.6
43,964 + GFF4803 0.24 +0.4
43,964 + GFF4803 0.24 +0.7
43,964 + GFF4803 0.24 -0.4
43,965 - GFF4803 0.24 +0.6
43,965 - GFF4803 0.24 -0.4
44,076 + GFF4803 0.38 -0.3
44,076 + GFF4803 0.38 -1.8
44,077 - GFF4803 0.38 -0.9
44,077 - GFF4803 0.38 +0.8
44,283 + GFF4803 0.64 +0.7
44,283 + GFF4803 0.64 -0.8
44,284 - GFF4803 0.64 +0.9
44,348 + GFF4803 0.72 -1.5
44,348 + GFF4803 0.72 -0.1
44,349 - GFF4803 0.72 -0.1
44,349 - GFF4803 0.72 +0.9
44,447 + GFF4803 0.84 -1.0
44,447 + GFF4803 0.84 +0.7
44,447 + GFF4803 0.84 -1.4
44,447 + GFF4803 0.84 +0.6
44,447 + GFF4803 0.84 -0.7
44,448 - GFF4803 0.84 -1.5
44,448 - GFF4803 0.84 +2.0
44,448 - GFF4803 0.84 -1.3
44,562 + +0.5
44,563 - -0.3
44,563 - +0.3
44,662 + -0.3
44,662 + +0.9
44,663 - -0.1
44,663 - +0.5
44,738 - GFF4804 0.17 -0.1
44,756 + GFF4804 0.19 -0.5
44,756 + GFF4804 0.19 -0.4
44,757 - GFF4804 0.20 -0.5
44,758 + GFF4804 0.20 -1.2
44,759 - GFF4804 0.20 +0.1
44,759 - GFF4804 0.20 -0.0
44,759 - GFF4804 0.20 -0.3

Or see this region's nucleotide sequence