Strain Fitness in Xanthobacter sp. DMC5 around GFF4798

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4796 and GFF4797 overlap by 4 nucleotidesGFF4797 and GFF4798 overlap by 1 nucleotidesGFF4798 and GFF4799 overlap by 1 nucleotides GFF4796 - Electron transfer flavoprotein subunit beta, at 36,478 to 37,227 GFF4796 GFF4797 - Citrate lyase subunit beta-like protein, at 37,224 to 38,063 GFF4797 GFF4798 - Mesaconyl-C(4)-CoA hydratase, at 38,063 to 38,917 GFF4798 GFF4799 - Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase, at 38,917 to 40,071 GFF4799 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 37.182 kb on + strandat 37.182 kb on + strandat 37.182 kb on + strandat 37.483 kb on + strand, within GFF4797at 37.484 kb on - strand, within GFF4797at 37.484 kb on - strand, within GFF4797at 37.484 kb on - strand, within GFF4797at 37.526 kb on + strand, within GFF4797at 37.527 kb on - strand, within GFF4797at 37.661 kb on + strand, within GFF4797at 37.662 kb on - strand, within GFF4797at 37.662 kb on - strand, within GFF4797at 38.086 kb on + strandat 38.086 kb on + strandat 38.086 kb on + strandat 38.087 kb on - strandat 38.087 kb on - strandat 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.235 kb on + strand, within GFF4798at 38.236 kb on - strand, within GFF4798at 38.236 kb on - strand, within GFF4798at 38.307 kb on + strand, within GFF4798at 38.308 kb on - strand, within GFF4798at 38.308 kb on - strand, within GFF4798at 38.319 kb on + strand, within GFF4798at 38.319 kb on + strand, within GFF4798at 38.458 kb on - strand, within GFF4798at 38.554 kb on + strand, within GFF4798at 38.555 kb on - strand, within GFF4798at 38.555 kb on - strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.572 kb on + strand, within GFF4798at 38.811 kb on + strand, within GFF4798at 38.811 kb on + strand, within GFF4798at 38.811 kb on + strand, within GFF4798at 38.812 kb on - strand, within GFF4798at 38.845 kb on + strandat 38.845 kb on + strandat 38.846 kb on - strandat 38.886 kb on - strandat 38.921 kb on + strandat 38.921 kb on + strandat 38.922 kb on - strandat 38.922 kb on - strandat 38.996 kb on + strandat 39.032 kb on + strandat 39.032 kb on + strandat 39.033 kb on - strand, within GFF4799at 39.033 kb on - strand, within GFF4799at 39.033 kb on - strand, within GFF4799at 39.206 kb on + strand, within GFF4799at 39.207 kb on - strand, within GFF4799at 39.207 kb on - strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.371 kb on + strand, within GFF4799at 39.523 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.759 kb on - strand, within GFF4799at 39.759 kb on - strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.905 kb on + strand, within GFF4799at 39.906 kb on - strand, within GFF4799at 39.906 kb on - strand, within GFF4799

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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37,182 + +0.4
37,182 + -0.4
37,182 + +0.3
37,483 + GFF4797 0.31 -0.4
37,484 - GFF4797 0.31 +2.6
37,484 - GFF4797 0.31 -0.0
37,484 - GFF4797 0.31 -0.5
37,526 + GFF4797 0.36 -0.9
37,527 - GFF4797 0.36 +0.1
37,661 + GFF4797 0.52 +0.2
37,662 - GFF4797 0.52 -0.4
37,662 - GFF4797 0.52 +0.8
38,086 + -1.7
38,086 + -0.1
38,086 + -1.1
38,087 - +0.4
38,087 - -0.9
38,235 + GFF4798 0.20 -0.3
38,235 + GFF4798 0.20 -0.9
38,235 + GFF4798 0.20 +0.4
38,235 + GFF4798 0.20 +0.9
38,235 + GFF4798 0.20 +0.6
38,236 - GFF4798 0.20 +0.5
38,236 - GFF4798 0.20 -0.1
38,307 + GFF4798 0.29 -0.1
38,308 - GFF4798 0.29 +0.3
38,308 - GFF4798 0.29 -1.3
38,319 + GFF4798 0.30 -0.0
38,319 + GFF4798 0.30 +1.1
38,458 - GFF4798 0.46 -0.8
38,554 + GFF4798 0.57 -1.9
38,555 - GFF4798 0.58 -0.8
38,555 - GFF4798 0.58 -0.3
38,572 + GFF4798 0.60 +0.2
38,572 + GFF4798 0.60 +0.1
38,572 + GFF4798 0.60 -0.5
38,572 + GFF4798 0.60 +1.3
38,811 + GFF4798 0.87 -0.6
38,811 + GFF4798 0.87 +1.2
38,811 + GFF4798 0.87 -0.6
38,812 - GFF4798 0.88 -0.4
38,845 + +0.1
38,845 + -0.2
38,846 - +0.5
38,886 - -0.3
38,921 + +0.1
38,921 + +1.6
38,922 - -0.9
38,922 - -0.2
38,996 + +0.3
39,032 + +0.4
39,032 + -0.1
39,033 - GFF4799 0.10 +1.6
39,033 - GFF4799 0.10 +0.2
39,033 - GFF4799 0.10 -0.1
39,206 + GFF4799 0.25 -0.4
39,207 - GFF4799 0.25 -0.6
39,207 - GFF4799 0.25 +0.1
39,262 + GFF4799 0.30 -0.7
39,262 + GFF4799 0.30 -1.1
39,262 + GFF4799 0.30 -2.3
39,262 + GFF4799 0.30 -0.6
39,262 + GFF4799 0.30 -0.7
39,262 + GFF4799 0.30 -0.3
39,371 + GFF4799 0.39 -0.5
39,523 + GFF4799 0.52 +0.1
39,641 + GFF4799 0.63 +1.3
39,641 + GFF4799 0.63 -0.1
39,641 + GFF4799 0.63 -0.8
39,641 + GFF4799 0.63 +0.1
39,642 - GFF4799 0.63 -0.5
39,642 - GFF4799 0.63 -0.4
39,642 - GFF4799 0.63 -0.5
39,642 - GFF4799 0.63 +0.7
39,642 - GFF4799 0.63 +1.3
39,759 - GFF4799 0.73 -0.5
39,759 - GFF4799 0.73 +1.1
39,809 + GFF4799 0.77 +1.1
39,809 + GFF4799 0.77 +1.3
39,809 + GFF4799 0.77 +1.3
39,809 + GFF4799 0.77 +0.1
39,809 + GFF4799 0.77 +0.2
39,809 + GFF4799 0.77 -1.1
39,809 + GFF4799 0.77 +0.1
39,810 - GFF4799 0.77 +0.5
39,810 - GFF4799 0.77 -1.0
39,810 - GFF4799 0.77 -0.0
39,810 - GFF4799 0.77 -1.1
39,810 - GFF4799 0.77 +0.8
39,810 - GFF4799 0.77 -0.4
39,810 - GFF4799 0.77 +1.5
39,810 - GFF4799 0.77 -0.9
39,810 - GFF4799 0.77 +0.7
39,810 - GFF4799 0.77 +0.6
39,810 - GFF4799 0.77 -0.3
39,810 - GFF4799 0.77 -0.3
39,810 - GFF4799 0.77 +1.8
39,810 - GFF4799 0.77 +0.9
39,905 + GFF4799 0.86 -0.3
39,906 - GFF4799 0.86 +0.0
39,906 - GFF4799 0.86 +0.4

Or see this region's nucleotide sequence