Strain Fitness in Xanthobacter sp. DMC5 around GFF4792

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4791 and GFF4792 overlap by 4 nucleotidesGFF4792 and GFF4793 are separated by 139 nucleotidesGFF4793 and GFF4794 are separated by 83 nucleotidesGFF4794 and GFF4795 are separated by 37 nucleotides GFF4791 - Vitamin B12 import ATP-binding protein BtuD, at 32,174 to 33,982 GFF4791 GFF4792 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 33,979 to 34,689 GFF4792 GFF4793 - hypothetical protein, at 34,829 to 35,041 GFF4793 GFF4794 - hypothetical protein, at 35,125 to 35,496 GFF4794 GFF4795 - Electron transfer flavoprotein subunit alpha, at 35,534 to 36,478 GFF4795 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 33.014 kb on + strand, within GFF4791at 33.014 kb on + strand, within GFF4791at 33.015 kb on - strand, within GFF4791at 33.068 kb on + strand, within GFF4791at 33.068 kb on + strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.074 kb on - strand, within GFF4791at 33.524 kb on + strand, within GFF4791at 33.920 kb on + strandat 33.920 kb on + strandat 33.921 kb on - strandat 33.921 kb on - strandat 33.921 kb on - strandat 33.921 kb on - strandat 33.921 kb on - strandat 34.002 kb on + strandat 34.003 kb on - strandat 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.134 kb on + strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.135 kb on - strand, within GFF4792at 34.200 kb on + strand, within GFF4792at 34.201 kb on - strand, within GFF4792at 34.201 kb on - strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.220 kb on + strand, within GFF4792at 34.221 kb on - strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.504 kb on + strand, within GFF4792at 34.505 kb on + strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.505 kb on - strand, within GFF4792at 34.538 kb on + strand, within GFF4792at 34.538 kb on + strand, within GFF4792at 34.539 kb on - strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.597 kb on + strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.598 kb on - strand, within GFF4792at 34.675 kb on + strandat 34.675 kb on + strandat 34.676 kb on - strandat 34.685 kb on + strandat 34.685 kb on + strandat 34.686 kb on - strandat 34.703 kb on + strandat 34.703 kb on + strandat 34.704 kb on - strandat 34.704 kb on - strandat 34.889 kb on + strand, within GFF4793at 34.898 kb on + strand, within GFF4793at 34.997 kb on - strand, within GFF4793at 34.997 kb on - strand, within GFF4793at 35.060 kb on - strandat 35.060 kb on - strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.136 kb on - strandat 35.138 kb on + strandat 35.138 kb on + strandat 35.138 kb on + strandat 35.138 kb on + strandat 35.139 kb on - strandat 35.213 kb on + strand, within GFF4794at 35.213 kb on + strand, within GFF4794at 35.214 kb on - strand, within GFF4794at 35.214 kb on - strand, within GFF4794at 35.294 kb on + strand, within GFF4794at 35.294 kb on + strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.295 kb on - strand, within GFF4794at 35.496 kb on + strandat 35.496 kb on + strandat 35.496 kb on + strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.497 kb on - strandat 35.543 kb on - strandat 35.553 kb on - strandat 35.604 kb on + strandat 35.604 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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33,014 + GFF4791 0.46 +0.3
33,014 + GFF4791 0.46 +0.6
33,015 - GFF4791 0.46 +0.6
33,068 + GFF4791 0.49 +0.1
33,068 + GFF4791 0.49 +1.7
33,069 - GFF4791 0.49 -0.7
33,069 - GFF4791 0.49 +0.6
33,069 - GFF4791 0.49 +0.5
33,074 - GFF4791 0.50 +0.1
33,524 + GFF4791 0.75 +0.2
33,920 + -0.2
33,920 + -1.0
33,921 - +0.7
33,921 - -0.2
33,921 - -0.9
33,921 - +0.5
33,921 - -0.1
34,002 + -0.6
34,003 - -0.5
34,134 + GFF4792 0.22 +0.5
34,134 + GFF4792 0.22 +2.6
34,134 + GFF4792 0.22 -0.5
34,134 + GFF4792 0.22 +0.0
34,134 + GFF4792 0.22 -1.1
34,134 + GFF4792 0.22 +0.1
34,134 + GFF4792 0.22 -1.1
34,135 - GFF4792 0.22 +0.2
34,135 - GFF4792 0.22 +0.2
34,135 - GFF4792 0.22 +1.0
34,135 - GFF4792 0.22 +0.7
34,135 - GFF4792 0.22 -0.1
34,135 - GFF4792 0.22 -0.5
34,135 - GFF4792 0.22 -0.1
34,135 - GFF4792 0.22 +1.3
34,200 + GFF4792 0.31 -1.3
34,201 - GFF4792 0.31 -0.8
34,201 - GFF4792 0.31 -1.3
34,220 + GFF4792 0.34 -1.0
34,220 + GFF4792 0.34 -2.2
34,220 + GFF4792 0.34 +2.2
34,221 - GFF4792 0.34 -0.1
34,504 + GFF4792 0.74 -1.0
34,504 + GFF4792 0.74 -1.0
34,504 + GFF4792 0.74 -0.2
34,504 + GFF4792 0.74 +0.9
34,505 + GFF4792 0.74 +0.4
34,505 - GFF4792 0.74 +1.2
34,505 - GFF4792 0.74 +0.0
34,505 - GFF4792 0.74 -0.0
34,505 - GFF4792 0.74 +0.2
34,538 + GFF4792 0.79 +1.0
34,538 + GFF4792 0.79 -0.6
34,539 - GFF4792 0.79 -1.6
34,597 + GFF4792 0.87 -0.8
34,597 + GFF4792 0.87 -1.4
34,597 + GFF4792 0.87 +2.3
34,597 + GFF4792 0.87 -0.7
34,597 + GFF4792 0.87 -0.5
34,597 + GFF4792 0.87 +0.7
34,598 - GFF4792 0.87 +2.3
34,598 - GFF4792 0.87 -0.0
34,598 - GFF4792 0.87 -0.2
34,598 - GFF4792 0.87 -2.1
34,598 - GFF4792 0.87 -0.6
34,675 + +0.3
34,675 + +0.3
34,676 - +1.0
34,685 + +0.4
34,685 + +0.6
34,686 - -1.1
34,703 + -0.0
34,703 + -0.9
34,704 - -0.3
34,704 - -0.8
34,889 + GFF4793 0.28 -0.1
34,898 + GFF4793 0.32 -0.6
34,997 - GFF4793 0.79 +0.1
34,997 - GFF4793 0.79 -0.1
35,060 - +1.1
35,060 - -0.2
35,135 + +0.9
35,135 + +0.1
35,135 + -0.6
35,135 + -0.8
35,135 + +0.4
35,135 + -0.8
35,136 - +0.5
35,138 + -0.3
35,138 + +1.6
35,138 + -0.2
35,138 + -0.1
35,139 - +1.5
35,213 + GFF4794 0.24 -0.4
35,213 + GFF4794 0.24 +0.6
35,214 - GFF4794 0.24 +0.4
35,214 - GFF4794 0.24 +0.7
35,294 + GFF4794 0.45 -0.9
35,294 + GFF4794 0.45 +0.9
35,295 - GFF4794 0.46 -0.2
35,295 - GFF4794 0.46 -0.3
35,295 - GFF4794 0.46 +0.7
35,295 - GFF4794 0.46 -1.2
35,496 + -1.6
35,496 + +0.8
35,496 + -1.6
35,497 - -1.5
35,497 - +1.0
35,497 - -1.6
35,497 - -1.0
35,497 - -0.6
35,497 - -0.2
35,543 - -0.5
35,553 - -0.7
35,604 + -0.7
35,604 + -0.7

Or see this region's nucleotide sequence