Strain Fitness in Xanthobacter sp. DMC5 around GFF4789

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4788 and GFF4789 are separated by 400 nucleotidesGFF4789 and GFF4790 are separated by 17 nucleotidesGFF4790 and GFF4791 overlap by 4 nucleotides GFF4788 - DNA-binding transcriptional repressor YiaJ, at 28,722 to 29,501 GFF4788 GFF4789 - hypothetical protein, at 29,902 to 31,284 GFF4789 GFF4790 - High-affinity branched-chain amino acid transport system permease protein LivH, at 31,302 to 32,177 GFF4790 GFF4791 - Vitamin B12 import ATP-binding protein BtuD, at 32,174 to 33,982 GFF4791 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 28.909 kb on - strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.953 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.956 kb on - strand, within GFF4788at 28.956 kb on - strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.104 kb on - strand, within GFF4788at 29.133 kb on + strand, within GFF4788at 29.133 kb on + strand, within GFF4788at 29.134 kb on - strand, within GFF4788at 29.134 kb on - strand, within GFF4788at 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.567 kb on - strandat 29.901 kb on + strandat 29.901 kb on + strandat 29.902 kb on - strandat 30.091 kb on + strand, within GFF4789at 30.091 kb on + strand, within GFF4789at 30.091 kb on + strand, within GFF4789at 30.297 kb on + strand, within GFF4789at 30.465 kb on + strand, within GFF4789at 30.466 kb on - strand, within GFF4789at 30.490 kb on + strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.542 kb on - strand, within GFF4789at 30.542 kb on - strand, within GFF4789at 30.565 kb on - strand, within GFF4789at 30.565 kb on - strand, within GFF4789at 30.598 kb on + strand, within GFF4789at 30.598 kb on + strand, within GFF4789at 30.598 kb on + strand, within GFF4789at 30.599 kb on - strand, within GFF4789at 30.599 kb on - strand, within GFF4789at 30.688 kb on + strand, within GFF4789at 30.689 kb on - strand, within GFF4789at 30.770 kb on - strand, within GFF4789at 30.770 kb on - strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.797 kb on - strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.827 kb on - strand, within GFF4789at 30.923 kb on - strand, within GFF4789at 30.967 kb on + strand, within GFF4789at 30.968 kb on - strand, within GFF4789at 30.968 kb on - strand, within GFF4789at 31.015 kb on + strand, within GFF4789at 31.015 kb on + strand, within GFF4789at 31.016 kb on - strand, within GFF4789at 31.016 kb on - strand, within GFF4789at 31.016 kb on - strand, within GFF4789at 31.087 kb on + strand, within GFF4789at 31.202 kb on + strandat 31.203 kb on - strandat 31.359 kb on + strandat 31.359 kb on + strandat 31.360 kb on - strandat 31.360 kb on - strandat 31.445 kb on + strand, within GFF4790at 31.445 kb on + strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.449 kb on + strand, within GFF4790at 31.449 kb on + strand, within GFF4790at 31.450 kb on - strand, within GFF4790at 31.491 kb on + strand, within GFF4790at 31.491 kb on + strand, within GFF4790at 31.546 kb on - strand, within GFF4790at 31.861 kb on + strand, within GFF4790at 31.861 kb on + strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.879 kb on + strand, within GFF4790at 31.880 kb on - strand, within GFF4790at 31.880 kb on - strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.929 kb on - strand, within GFF4790at 31.929 kb on - strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.969 kb on - strand, within GFF4790at 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.169 kb on + strandat 32.270 kb on + strandat 32.270 kb on + strandat 32.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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28,909 - GFF4788 0.24 +0.0
28,951 + GFF4788 0.29 +0.5
28,951 + GFF4788 0.29 -0.7
28,951 + GFF4788 0.29 -0.4
28,951 + GFF4788 0.29 +0.1
28,951 + GFF4788 0.29 -0.1
28,951 + GFF4788 0.29 -0.1
28,951 + GFF4788 0.29 +0.3
28,952 - GFF4788 0.29 -0.5
28,952 - GFF4788 0.29 +0.0
28,952 - GFF4788 0.29 -1.7
28,952 - GFF4788 0.29 -0.1
28,952 - GFF4788 0.29 +0.2
28,952 - GFF4788 0.29 -0.2
28,952 - GFF4788 0.29 -0.8
28,953 + GFF4788 0.30 -0.7
28,955 + GFF4788 0.30 +0.2
28,955 + GFF4788 0.30 +0.9
28,955 + GFF4788 0.30 +0.2
28,955 + GFF4788 0.30 -0.3
28,955 + GFF4788 0.30 +1.0
28,955 + GFF4788 0.30 +0.6
28,956 - GFF4788 0.30 +1.3
28,956 - GFF4788 0.30 -0.2
29,064 + GFF4788 0.44 -0.6
29,064 + GFF4788 0.44 -0.0
29,064 + GFF4788 0.44 +0.2
29,064 + GFF4788 0.44 -1.5
29,064 + GFF4788 0.44 +0.9
29,065 - GFF4788 0.44 -0.3
29,065 - GFF4788 0.44 -0.7
29,065 - GFF4788 0.44 +0.2
29,065 - GFF4788 0.44 -0.8
29,065 - GFF4788 0.44 -0.4
29,065 - GFF4788 0.44 -0.1
29,104 - GFF4788 0.49 -0.4
29,133 + GFF4788 0.53 +0.3
29,133 + GFF4788 0.53 -0.7
29,134 - GFF4788 0.53 -0.6
29,134 - GFF4788 0.53 +0.5
29,555 + -0.9
29,555 + -1.3
29,555 + -0.9
29,555 + -0.6
29,555 + -0.4
29,555 + -0.0
29,555 + +1.7
29,555 + +0.7
29,555 + -1.0
29,555 + -0.7
29,556 - +0.1
29,556 - -0.8
29,556 - -0.5
29,556 - -0.5
29,556 - -0.3
29,556 - +0.4
29,556 - -0.3
29,556 - +0.3
29,556 - +0.1
29,556 - -1.6
29,556 - -2.6
29,556 - -0.5
29,556 - +0.5
29,556 - -0.1
29,556 - -0.7
29,556 - +0.6
29,556 - -2.4
29,556 - +1.5
29,556 - -0.4
29,566 + +1.1
29,566 + +1.1
29,566 + -0.3
29,567 - -0.3
29,901 + +1.2
29,901 + -0.8
29,902 - -0.2
30,091 + GFF4789 0.14 -0.2
30,091 + GFF4789 0.14 +0.6
30,091 + GFF4789 0.14 +1.9
30,297 + GFF4789 0.29 -0.1
30,465 + GFF4789 0.41 -2.1
30,466 - GFF4789 0.41 +0.5
30,490 + GFF4789 0.43 -0.3
30,491 - GFF4789 0.43 +0.2
30,491 - GFF4789 0.43 +1.6
30,491 - GFF4789 0.43 -0.3
30,542 - GFF4789 0.46 +0.7
30,542 - GFF4789 0.46 +0.6
30,565 - GFF4789 0.48 +0.5
30,565 - GFF4789 0.48 -1.3
30,598 + GFF4789 0.50 -0.0
30,598 + GFF4789 0.50 +1.2
30,598 + GFF4789 0.50 +0.4
30,599 - GFF4789 0.50 +0.0
30,599 - GFF4789 0.50 +0.4
30,688 + GFF4789 0.57 +0.5
30,689 - GFF4789 0.57 -0.3
30,770 - GFF4789 0.63 -0.0
30,770 - GFF4789 0.63 -0.4
30,771 + GFF4789 0.63 +0.7
30,771 + GFF4789 0.63 -1.0
30,771 + GFF4789 0.63 -0.1
30,771 + GFF4789 0.63 -0.0
30,797 - GFF4789 0.65 +0.0
30,826 + GFF4789 0.67 -1.3
30,826 + GFF4789 0.67 +0.9
30,826 + GFF4789 0.67 +0.1
30,826 + GFF4789 0.67 +0.7
30,827 - GFF4789 0.67 -0.4
30,923 - GFF4789 0.74 -0.1
30,967 + GFF4789 0.77 +1.6
30,968 - GFF4789 0.77 +0.5
30,968 - GFF4789 0.77 +0.5
31,015 + GFF4789 0.80 -1.3
31,015 + GFF4789 0.80 +0.9
31,016 - GFF4789 0.81 +0.4
31,016 - GFF4789 0.81 +0.7
31,016 - GFF4789 0.81 +0.1
31,087 + GFF4789 0.86 +0.2
31,202 + -0.7
31,203 - +0.4
31,359 + -0.4
31,359 + +0.5
31,360 - +0.1
31,360 - -0.3
31,445 + GFF4790 0.16 -2.0
31,445 + GFF4790 0.16 -0.1
31,446 - GFF4790 0.16 -0.2
31,446 - GFF4790 0.16 -1.3
31,446 - GFF4790 0.16 -1.9
31,446 - GFF4790 0.16 -0.0
31,449 + GFF4790 0.17 -0.5
31,449 + GFF4790 0.17 +1.1
31,450 - GFF4790 0.17 +0.7
31,491 + GFF4790 0.22 -0.0
31,491 + GFF4790 0.22 -0.3
31,546 - GFF4790 0.28 -0.2
31,861 + GFF4790 0.64 -0.1
31,861 + GFF4790 0.64 -0.9
31,862 - GFF4790 0.64 -0.3
31,862 - GFF4790 0.64 -0.2
31,862 - GFF4790 0.64 +0.4
31,862 - GFF4790 0.64 +0.4
31,879 + GFF4790 0.66 -0.1
31,880 - GFF4790 0.66 +1.3
31,880 - GFF4790 0.66 -0.9
31,928 + GFF4790 0.71 -0.0
31,928 + GFF4790 0.71 -0.4
31,928 + GFF4790 0.71 -0.7
31,929 - GFF4790 0.72 -0.0
31,929 - GFF4790 0.72 -0.5
31,968 + GFF4790 0.76 -0.4
31,968 + GFF4790 0.76 -0.9
31,968 + GFF4790 0.76 +0.5
31,969 - GFF4790 0.76 -0.9
32,109 + -0.4
32,109 + +0.3
32,109 + +0.3
32,109 + -0.1
32,109 + -0.5
32,109 + -1.1
32,109 + -0.5
32,109 + -0.0
32,110 - -0.4
32,110 - -0.5
32,110 - -1.8
32,110 - +0.1
32,169 + -0.1
32,270 + -0.8
32,270 + -0.1
32,271 - +1.6

Or see this region's nucleotide sequence