Strain Fitness in Xanthobacter sp. DMC5 around GFF4788

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4786 and GFF4787 are separated by 43 nucleotidesGFF4787 and GFF4788 are separated by 165 nucleotidesGFF4788 and GFF4789 are separated by 400 nucleotides GFF4786 - putative acyl-CoA dehydrogenase fadE25, at 26,891 to 28,033 GFF4786 GFF4787 - hypothetical protein, at 28,077 to 28,556 GFF4787 GFF4788 - DNA-binding transcriptional repressor YiaJ, at 28,722 to 29,501 GFF4788 GFF4789 - hypothetical protein, at 29,902 to 31,284 GFF4789 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 27.783 kb on - strand, within GFF4786at 27.783 kb on - strand, within GFF4786at 27.834 kb on + strand, within GFF4786at 27.948 kb on - strandat 27.948 kb on - strandat 27.948 kb on - strandat 27.948 kb on - strandat 27.948 kb on - strandat 28.127 kb on + strand, within GFF4787at 28.127 kb on + strand, within GFF4787at 28.343 kb on + strand, within GFF4787at 28.343 kb on + strand, within GFF4787at 28.343 kb on + strand, within GFF4787at 28.344 kb on - strand, within GFF4787at 28.344 kb on - strand, within GFF4787at 28.344 kb on - strand, within GFF4787at 28.455 kb on - strand, within GFF4787at 28.460 kb on + strand, within GFF4787at 28.460 kb on + strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.487 kb on + strand, within GFF4787at 28.487 kb on + strand, within GFF4787at 28.488 kb on - strand, within GFF4787at 28.488 kb on - strand, within GFF4787at 28.488 kb on - strand, within GFF4787at 28.500 kb on + strand, within GFF4787at 28.500 kb on + strand, within GFF4787at 28.501 kb on - strand, within GFF4787at 28.501 kb on - strand, within GFF4787at 28.501 kb on - strand, within GFF4787at 28.602 kb on + strandat 28.654 kb on + strandat 28.655 kb on - strandat 28.655 kb on - strandat 28.716 kb on + strandat 28.717 kb on - strandat 28.717 kb on - strandat 28.719 kb on - strandat 28.719 kb on - strandat 28.719 kb on - strandat 28.719 kb on - strandat 28.748 kb on + strandat 28.748 kb on + strandat 28.909 kb on - strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.953 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.956 kb on - strand, within GFF4788at 28.956 kb on - strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.064 kb on + strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.065 kb on - strand, within GFF4788at 29.104 kb on - strand, within GFF4788at 29.133 kb on + strand, within GFF4788at 29.133 kb on + strand, within GFF4788at 29.134 kb on - strand, within GFF4788at 29.134 kb on - strand, within GFF4788at 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.555 kb on + strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.556 kb on - strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.567 kb on - strandat 29.901 kb on + strandat 29.901 kb on + strandat 29.902 kb on - strandat 30.091 kb on + strand, within GFF4789at 30.091 kb on + strand, within GFF4789at 30.091 kb on + strand, within GFF4789at 30.297 kb on + strand, within GFF4789at 30.465 kb on + strand, within GFF4789at 30.466 kb on - strand, within GFF4789at 30.490 kb on + strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.491 kb on - strand, within GFF4789

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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27,783 - GFF4786 0.78 -0.3
27,783 - GFF4786 0.78 +0.7
27,834 + GFF4786 0.83 -1.0
27,948 - +0.0
27,948 - +0.2
27,948 - +0.7
27,948 - -0.0
27,948 - +0.3
28,127 + GFF4787 0.10 +0.1
28,127 + GFF4787 0.10 -1.3
28,343 + GFF4787 0.55 +1.3
28,343 + GFF4787 0.55 -0.7
28,343 + GFF4787 0.55 +0.5
28,344 - GFF4787 0.56 +1.5
28,344 - GFF4787 0.56 +0.4
28,344 - GFF4787 0.56 +1.0
28,455 - GFF4787 0.79 +0.5
28,460 + GFF4787 0.80 -0.4
28,460 + GFF4787 0.80 -0.1
28,461 - GFF4787 0.80 -1.0
28,461 - GFF4787 0.80 -1.0
28,461 - GFF4787 0.80 +0.1
28,461 - GFF4787 0.80 +0.1
28,487 + GFF4787 0.85 +0.1
28,487 + GFF4787 0.85 -0.3
28,488 - GFF4787 0.86 -1.3
28,488 - GFF4787 0.86 -1.2
28,488 - GFF4787 0.86 -0.3
28,500 + GFF4787 0.88 +1.3
28,500 + GFF4787 0.88 +1.3
28,501 - GFF4787 0.88 -0.4
28,501 - GFF4787 0.88 -0.1
28,501 - GFF4787 0.88 +0.9
28,602 + -0.0
28,654 + -0.8
28,655 - -0.7
28,655 - +0.3
28,716 + +0.9
28,717 - -0.1
28,717 - -0.0
28,719 - -1.3
28,719 - -0.1
28,719 - +0.5
28,719 - +0.4
28,748 + -0.2
28,748 + -0.6
28,909 - GFF4788 0.24 +0.0
28,951 + GFF4788 0.29 +0.5
28,951 + GFF4788 0.29 -0.7
28,951 + GFF4788 0.29 -0.4
28,951 + GFF4788 0.29 +0.1
28,951 + GFF4788 0.29 -0.1
28,951 + GFF4788 0.29 -0.1
28,951 + GFF4788 0.29 +0.3
28,952 - GFF4788 0.29 -0.5
28,952 - GFF4788 0.29 +0.0
28,952 - GFF4788 0.29 -1.7
28,952 - GFF4788 0.29 -0.1
28,952 - GFF4788 0.29 +0.2
28,952 - GFF4788 0.29 -0.2
28,952 - GFF4788 0.29 -0.8
28,953 + GFF4788 0.30 -0.7
28,955 + GFF4788 0.30 +0.2
28,955 + GFF4788 0.30 +0.9
28,955 + GFF4788 0.30 +0.2
28,955 + GFF4788 0.30 -0.3
28,955 + GFF4788 0.30 +1.0
28,955 + GFF4788 0.30 +0.6
28,956 - GFF4788 0.30 +1.3
28,956 - GFF4788 0.30 -0.2
29,064 + GFF4788 0.44 -0.6
29,064 + GFF4788 0.44 -0.0
29,064 + GFF4788 0.44 +0.2
29,064 + GFF4788 0.44 -1.5
29,064 + GFF4788 0.44 +0.9
29,065 - GFF4788 0.44 -0.3
29,065 - GFF4788 0.44 -0.7
29,065 - GFF4788 0.44 +0.2
29,065 - GFF4788 0.44 -0.8
29,065 - GFF4788 0.44 -0.4
29,065 - GFF4788 0.44 -0.1
29,104 - GFF4788 0.49 -0.4
29,133 + GFF4788 0.53 +0.3
29,133 + GFF4788 0.53 -0.7
29,134 - GFF4788 0.53 -0.6
29,134 - GFF4788 0.53 +0.5
29,555 + -0.9
29,555 + -1.3
29,555 + -0.9
29,555 + -0.6
29,555 + -0.4
29,555 + -0.0
29,555 + +1.7
29,555 + +0.7
29,555 + -1.0
29,555 + -0.7
29,556 - +0.1
29,556 - -0.8
29,556 - -0.5
29,556 - -0.5
29,556 - -0.3
29,556 - +0.4
29,556 - -0.3
29,556 - +0.3
29,556 - +0.1
29,556 - -1.6
29,556 - -2.6
29,556 - -0.5
29,556 - +0.5
29,556 - -0.1
29,556 - -0.7
29,556 - +0.6
29,556 - -2.4
29,556 - +1.5
29,556 - -0.4
29,566 + +1.1
29,566 + +1.1
29,566 + -0.3
29,567 - -0.3
29,901 + +1.2
29,901 + -0.8
29,902 - -0.2
30,091 + GFF4789 0.14 -0.2
30,091 + GFF4789 0.14 +0.6
30,091 + GFF4789 0.14 +1.9
30,297 + GFF4789 0.29 -0.1
30,465 + GFF4789 0.41 -2.1
30,466 - GFF4789 0.41 +0.5
30,490 + GFF4789 0.43 -0.3
30,491 - GFF4789 0.43 +0.2
30,491 - GFF4789 0.43 +1.6
30,491 - GFF4789 0.43 -0.3

Or see this region's nucleotide sequence