Strain Fitness in Xanthobacter sp. DMC5 around GFF4786

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4785 and GFF4786 are separated by 211 nucleotidesGFF4786 and GFF4787 are separated by 43 nucleotidesGFF4787 and GFF4788 are separated by 165 nucleotides GFF4785 - putative fatty acyl-CoA transferase, at 25,432 to 26,679 GFF4785 GFF4786 - putative acyl-CoA dehydrogenase fadE25, at 26,891 to 28,033 GFF4786 GFF4787 - hypothetical protein, at 28,077 to 28,556 GFF4787 GFF4788 - DNA-binding transcriptional repressor YiaJ, at 28,722 to 29,501 GFF4788 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 26.023 kb on + strand, within GFF4785at 26.023 kb on + strand, within GFF4785at 26.038 kb on - strand, within GFF4785at 26.038 kb on - strand, within GFF4785at 26.150 kb on - strand, within GFF4785at 26.200 kb on + strand, within GFF4785at 26.200 kb on + strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.201 kb on - strand, within GFF4785at 26.323 kb on - strand, within GFF4785at 26.329 kb on + strand, within GFF4785at 26.330 kb on - strand, within GFF4785at 26.437 kb on + strand, within GFF4785at 26.437 kb on + strand, within GFF4785at 26.437 kb on + strand, within GFF4785at 26.438 kb on - strand, within GFF4785at 26.438 kb on - strand, within GFF4785at 26.438 kb on - strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.449 kb on + strand, within GFF4785at 26.450 kb on - strand, within GFF4785at 26.661 kb on - strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.746 kb on + strandat 26.747 kb on - strandat 26.747 kb on - strandat 26.747 kb on - strandat 26.747 kb on - strandat 26.782 kb on - strandat 26.782 kb on - strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.825 kb on + strandat 26.826 kb on - strandat 26.826 kb on - strandat 26.826 kb on - strandat 26.826 kb on - strandat 26.826 kb on - strandat 27.000 kb on - strandat 27.066 kb on - strand, within GFF4786at 27.140 kb on + strand, within GFF4786at 27.141 kb on - strand, within GFF4786at 27.141 kb on - strand, within GFF4786at 27.212 kb on + strand, within GFF4786at 27.212 kb on + strand, within GFF4786at 27.212 kb on + strand, within GFF4786at 27.213 kb on - strand, within GFF4786at 27.213 kb on - strand, within GFF4786at 27.480 kb on + strand, within GFF4786at 27.536 kb on + strand, within GFF4786at 27.536 kb on + strand, within GFF4786at 27.536 kb on + strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.537 kb on - strand, within GFF4786at 27.783 kb on - strand, within GFF4786at 27.783 kb on - strand, within GFF4786at 27.834 kb on + strand, within GFF4786at 27.948 kb on - strandat 27.948 kb on - strandat 27.948 kb on - strandat 27.948 kb on - strandat 27.948 kb on - strandat 28.127 kb on + strand, within GFF4787at 28.127 kb on + strand, within GFF4787at 28.343 kb on + strand, within GFF4787at 28.343 kb on + strand, within GFF4787at 28.343 kb on + strand, within GFF4787at 28.344 kb on - strand, within GFF4787at 28.344 kb on - strand, within GFF4787at 28.344 kb on - strand, within GFF4787at 28.455 kb on - strand, within GFF4787at 28.460 kb on + strand, within GFF4787at 28.460 kb on + strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.461 kb on - strand, within GFF4787at 28.487 kb on + strand, within GFF4787at 28.487 kb on + strand, within GFF4787at 28.488 kb on - strand, within GFF4787at 28.488 kb on - strand, within GFF4787at 28.488 kb on - strand, within GFF4787at 28.500 kb on + strand, within GFF4787at 28.500 kb on + strand, within GFF4787at 28.501 kb on - strand, within GFF4787at 28.501 kb on - strand, within GFF4787at 28.501 kb on - strand, within GFF4787at 28.602 kb on + strandat 28.654 kb on + strandat 28.655 kb on - strandat 28.655 kb on - strandat 28.716 kb on + strandat 28.717 kb on - strandat 28.717 kb on - strandat 28.719 kb on - strandat 28.719 kb on - strandat 28.719 kb on - strandat 28.719 kb on - strandat 28.748 kb on + strandat 28.748 kb on + strandat 28.909 kb on - strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.951 kb on + strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.952 kb on - strand, within GFF4788at 28.953 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.955 kb on + strand, within GFF4788at 28.956 kb on - strand, within GFF4788at 28.956 kb on - strand, within GFF4788

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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26,023 + GFF4785 0.47 -1.3
26,023 + GFF4785 0.47 +0.8
26,038 - GFF4785 0.49 +0.5
26,038 - GFF4785 0.49 +0.6
26,150 - GFF4785 0.58 +0.0
26,200 + GFF4785 0.62 +0.4
26,200 + GFF4785 0.62 -1.2
26,201 - GFF4785 0.62 +1.2
26,201 - GFF4785 0.62 -0.4
26,201 - GFF4785 0.62 +0.5
26,201 - GFF4785 0.62 +0.2
26,323 - GFF4785 0.71 -0.0
26,329 + GFF4785 0.72 +0.7
26,330 - GFF4785 0.72 -1.1
26,437 + GFF4785 0.81 -1.7
26,437 + GFF4785 0.81 -0.6
26,437 + GFF4785 0.81 +1.6
26,438 - GFF4785 0.81 -1.6
26,438 - GFF4785 0.81 -0.5
26,438 - GFF4785 0.81 +0.5
26,449 + GFF4785 0.81 -1.1
26,449 + GFF4785 0.81 -0.9
26,449 + GFF4785 0.81 +0.0
26,449 + GFF4785 0.81 +0.5
26,450 - GFF4785 0.82 +0.2
26,661 - -1.7
26,746 + -0.9
26,746 + +0.1
26,746 + -0.1
26,746 + -0.0
26,746 + +0.8
26,746 + +0.2
26,747 - -0.1
26,747 - +0.3
26,747 - +0.4
26,747 - -0.3
26,782 - +0.6
26,782 - +1.3
26,825 + -0.5
26,825 + -0.0
26,825 + -0.5
26,825 + -0.1
26,825 + -1.4
26,825 + -0.9
26,825 + +0.1
26,826 - -0.9
26,826 - -0.6
26,826 - -1.2
26,826 - -1.9
26,826 - +1.7
27,000 - +0.4
27,066 - GFF4786 0.15 +0.6
27,140 + GFF4786 0.22 +0.9
27,141 - GFF4786 0.22 +0.1
27,141 - GFF4786 0.22 +0.1
27,212 + GFF4786 0.28 -0.0
27,212 + GFF4786 0.28 -0.7
27,212 + GFF4786 0.28 -0.2
27,213 - GFF4786 0.28 +1.5
27,213 - GFF4786 0.28 +0.4
27,480 + GFF4786 0.52 +0.1
27,536 + GFF4786 0.56 -0.1
27,536 + GFF4786 0.56 +0.7
27,536 + GFF4786 0.56 +0.6
27,537 - GFF4786 0.57 +0.3
27,537 - GFF4786 0.57 -0.3
27,537 - GFF4786 0.57 +0.3
27,537 - GFF4786 0.57 +0.1
27,783 - GFF4786 0.78 -0.3
27,783 - GFF4786 0.78 +0.7
27,834 + GFF4786 0.83 -1.0
27,948 - +0.0
27,948 - +0.2
27,948 - +0.7
27,948 - -0.0
27,948 - +0.3
28,127 + GFF4787 0.10 +0.1
28,127 + GFF4787 0.10 -1.3
28,343 + GFF4787 0.55 +1.3
28,343 + GFF4787 0.55 -0.7
28,343 + GFF4787 0.55 +0.5
28,344 - GFF4787 0.56 +1.5
28,344 - GFF4787 0.56 +0.4
28,344 - GFF4787 0.56 +1.0
28,455 - GFF4787 0.79 +0.5
28,460 + GFF4787 0.80 -0.4
28,460 + GFF4787 0.80 -0.1
28,461 - GFF4787 0.80 -1.0
28,461 - GFF4787 0.80 -1.0
28,461 - GFF4787 0.80 +0.1
28,461 - GFF4787 0.80 +0.1
28,487 + GFF4787 0.85 +0.1
28,487 + GFF4787 0.85 -0.3
28,488 - GFF4787 0.86 -1.3
28,488 - GFF4787 0.86 -1.2
28,488 - GFF4787 0.86 -0.3
28,500 + GFF4787 0.88 +1.3
28,500 + GFF4787 0.88 +1.3
28,501 - GFF4787 0.88 -0.4
28,501 - GFF4787 0.88 -0.1
28,501 - GFF4787 0.88 +0.9
28,602 + -0.0
28,654 + -0.8
28,655 - -0.7
28,655 - +0.3
28,716 + +0.9
28,717 - -0.1
28,717 - -0.0
28,719 - -1.3
28,719 - -0.1
28,719 - +0.5
28,719 - +0.4
28,748 + -0.2
28,748 + -0.6
28,909 - GFF4788 0.24 +0.0
28,951 + GFF4788 0.29 +0.5
28,951 + GFF4788 0.29 -0.7
28,951 + GFF4788 0.29 -0.4
28,951 + GFF4788 0.29 +0.1
28,951 + GFF4788 0.29 -0.1
28,951 + GFF4788 0.29 -0.1
28,951 + GFF4788 0.29 +0.3
28,952 - GFF4788 0.29 -0.5
28,952 - GFF4788 0.29 +0.0
28,952 - GFF4788 0.29 -1.7
28,952 - GFF4788 0.29 -0.1
28,952 - GFF4788 0.29 +0.2
28,952 - GFF4788 0.29 -0.2
28,952 - GFF4788 0.29 -0.8
28,953 + GFF4788 0.30 -0.7
28,955 + GFF4788 0.30 +0.2
28,955 + GFF4788 0.30 +0.9
28,955 + GFF4788 0.30 +0.2
28,955 + GFF4788 0.30 -0.3
28,955 + GFF4788 0.30 +1.0
28,955 + GFF4788 0.30 +0.6
28,956 - GFF4788 0.30 +1.3
28,956 - GFF4788 0.30 -0.2

Or see this region's nucleotide sequence