Strain Fitness in Xanthobacter sp. DMC5 around GFF478

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF477 and GFF478 are separated by 231 nucleotidesGFF478 and GFF479 are separated by 36 nucleotides GFF477 - HTH-type transcriptional regulator HdfR, at 504,522 to 505,427 GFF477 GFF478 - hypothetical protein, at 505,659 to 505,901 GFF478 GFF479 - hypothetical protein, at 505,938 to 507,101 GFF479 Position (kb) 505 506Strain fitness (log2 ratio) -2 -1 0 1at 504.691 kb on + strand, within GFF477at 504.691 kb on + strand, within GFF477at 504.692 kb on - strand, within GFF477at 504.695 kb on + strand, within GFF477at 504.766 kb on + strand, within GFF477at 504.767 kb on - strand, within GFF477at 504.804 kb on - strand, within GFF477at 504.832 kb on - strand, within GFF477at 504.862 kb on + strand, within GFF477at 504.863 kb on - strand, within GFF477at 504.999 kb on + strand, within GFF477at 505.030 kb on - strand, within GFF477at 505.092 kb on + strand, within GFF477at 505.093 kb on - strand, within GFF477at 505.093 kb on - strand, within GFF477at 505.093 kb on - strand, within GFF477at 505.095 kb on - strand, within GFF477at 505.095 kb on - strand, within GFF477at 505.128 kb on + strand, within GFF477at 505.129 kb on - strand, within GFF477at 505.129 kb on - strand, within GFF477at 505.153 kb on + strand, within GFF477at 505.153 kb on + strand, within GFF477at 505.153 kb on + strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.234 kb on - strand, within GFF477at 505.234 kb on - strand, within GFF477at 505.419 kb on - strandat 505.627 kb on - strandat 505.939 kb on + strandat 505.940 kb on - strandat 506.104 kb on + strand, within GFF479at 506.104 kb on + strand, within GFF479at 506.104 kb on + strand, within GFF479at 506.104 kb on + strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.197 kb on + strand, within GFF479at 506.197 kb on + strand, within GFF479at 506.198 kb on - strand, within GFF479at 506.198 kb on - strand, within GFF479at 506.198 kb on - strand, within GFF479at 506.498 kb on - strand, within GFF479at 506.498 kb on - strand, within GFF479at 506.522 kb on - strand, within GFF479at 506.617 kb on + strand, within GFF479at 506.686 kb on + strand, within GFF479at 506.687 kb on - strand, within GFF479at 506.687 kb on - strand, within GFF479at 506.758 kb on + strand, within GFF479at 506.801 kb on + strand, within GFF479at 506.802 kb on - strand, within GFF479at 506.830 kb on - strand, within GFF479at 506.856 kb on + strand, within GFF479at 506.857 kb on - strand, within GFF479

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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504,691 + GFF477 0.19 -0.9
504,691 + GFF477 0.19 +0.0
504,692 - GFF477 0.19 +0.2
504,695 + GFF477 0.19 -0.1
504,766 + GFF477 0.27 -1.8
504,767 - GFF477 0.27 -0.1
504,804 - GFF477 0.31 -0.3
504,832 - GFF477 0.34 +0.4
504,862 + GFF477 0.38 +0.2
504,863 - GFF477 0.38 -2.0
504,999 + GFF477 0.53 -0.6
505,030 - GFF477 0.56 -0.9
505,092 + GFF477 0.63 +1.2
505,093 - GFF477 0.63 +0.6
505,093 - GFF477 0.63 +0.6
505,093 - GFF477 0.63 -0.0
505,095 - GFF477 0.63 +1.2
505,095 - GFF477 0.63 +0.8
505,128 + GFF477 0.67 -0.0
505,129 - GFF477 0.67 -0.8
505,129 - GFF477 0.67 -0.6
505,153 + GFF477 0.70 -0.9
505,153 + GFF477 0.70 -0.7
505,153 + GFF477 0.70 +0.6
505,154 - GFF477 0.70 -2.5
505,154 - GFF477 0.70 -0.7
505,154 - GFF477 0.70 -0.3
505,154 - GFF477 0.70 +0.2
505,154 - GFF477 0.70 -0.6
505,154 - GFF477 0.70 -0.6
505,234 - GFF477 0.79 -1.7
505,234 - GFF477 0.79 -0.3
505,419 - +0.4
505,627 - +0.5
505,939 + -0.8
505,940 - -0.7
506,104 + GFF479 0.14 +0.1
506,104 + GFF479 0.14 -0.5
506,104 + GFF479 0.14 +1.1
506,104 + GFF479 0.14 -0.5
506,105 - GFF479 0.14 -0.1
506,105 - GFF479 0.14 -0.7
506,105 - GFF479 0.14 -0.4
506,105 - GFF479 0.14 +0.0
506,197 + GFF479 0.22 -0.6
506,197 + GFF479 0.22 -1.3
506,198 - GFF479 0.22 -0.5
506,198 - GFF479 0.22 +0.8
506,198 - GFF479 0.22 +0.4
506,498 - GFF479 0.48 +0.2
506,498 - GFF479 0.48 +1.0
506,522 - GFF479 0.50 +0.2
506,617 + GFF479 0.58 -0.3
506,686 + GFF479 0.64 -1.5
506,687 - GFF479 0.64 -0.7
506,687 - GFF479 0.64 +0.3
506,758 + GFF479 0.70 +0.9
506,801 + GFF479 0.74 +0.6
506,802 - GFF479 0.74 -0.6
506,830 - GFF479 0.77 -1.6
506,856 + GFF479 0.79 -0.5
506,857 - GFF479 0.79 -0.9

Or see this region's nucleotide sequence