Strain Fitness in Xanthobacter sp. DMC5 around GFF4767

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4766 and GFF4767 are separated by 85 nucleotidesGFF4767 and GFF4768 are separated by 10 nucleotides GFF4766 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,294 to 4,079 GFF4766 GFF4767 - Long-chain-fatty-acid--CoA ligase, at 4,165 to 5,817 GFF4767 GFF4768 - 2,4-dienoyl-CoA reductase, at 5,828 to 7,849 GFF4768 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 3.373 kb on + strand, within GFF4766at 3.374 kb on - strand, within GFF4766at 3.577 kb on + strand, within GFF4766at 3.577 kb on + strand, within GFF4766at 3.578 kb on - strand, within GFF4766at 3.592 kb on + strand, within GFF4766at 3.593 kb on - strand, within GFF4766at 3.593 kb on - strand, within GFF4766at 3.593 kb on - strand, within GFF4766at 3.854 kb on - strand, within GFF4766at 4.003 kb on + strandat 4.003 kb on + strandat 4.003 kb on + strandat 4.003 kb on + strandat 4.003 kb on + strandat 4.004 kb on - strandat 4.004 kb on - strandat 4.004 kb on - strandat 4.054 kb on + strandat 4.054 kb on + strandat 4.283 kb on + strandat 4.405 kb on + strand, within GFF4767at 4.406 kb on - strand, within GFF4767at 4.406 kb on - strand, within GFF4767at 4.440 kb on - strand, within GFF4767at 4.440 kb on - strand, within GFF4767at 4.440 kb on - strand, within GFF4767at 4.440 kb on - strand, within GFF4767at 4.440 kb on - strand, within GFF4767at 4.454 kb on - strand, within GFF4767at 4.523 kb on + strand, within GFF4767at 4.523 kb on + strand, within GFF4767at 4.524 kb on - strand, within GFF4767at 4.557 kb on + strand, within GFF4767at 4.557 kb on + strand, within GFF4767at 4.557 kb on + strand, within GFF4767at 4.558 kb on - strand, within GFF4767at 4.558 kb on - strand, within GFF4767at 4.558 kb on - strand, within GFF4767at 4.562 kb on + strand, within GFF4767at 4.562 kb on + strand, within GFF4767at 4.611 kb on - strand, within GFF4767at 4.836 kb on - strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.138 kb on + strand, within GFF4767at 5.138 kb on + strand, within GFF4767at 5.139 kb on - strand, within GFF4767at 5.139 kb on - strand, within GFF4767at 5.139 kb on - strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.214 kb on - strand, within GFF4767at 5.214 kb on - strand, within GFF4767at 5.252 kb on + strand, within GFF4767at 5.252 kb on + strand, within GFF4767at 5.252 kb on + strand, within GFF4767at 5.253 kb on - strand, within GFF4767at 5.253 kb on - strand, within GFF4767at 5.381 kb on - strand, within GFF4767at 5.382 kb on + strand, within GFF4767at 5.682 kb on + strandat 5.682 kb on + strandat 5.683 kb on - strandat 5.683 kb on - strandat 5.683 kb on - strandat 5.684 kb on + strandat 5.684 kb on + strandat 5.685 kb on - strandat 5.699 kb on + strandat 5.700 kb on - strandat 5.704 kb on - strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.946 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.057 kb on + strand, within GFF4768at 6.059 kb on + strand, within GFF4768at 6.303 kb on + strand, within GFF4768at 6.304 kb on - strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.556 kb on - strand, within GFF4768at 6.639 kb on + strand, within GFF4768at 6.639 kb on + strand, within GFF4768at 6.639 kb on + strand, within GFF4768at 6.640 kb on - strand, within GFF4768at 6.640 kb on - strand, within GFF4768at 6.640 kb on - strand, within GFF4768

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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3,373 + GFF4766 0.10 +0.6
3,374 - GFF4766 0.10 +0.1
3,577 + GFF4766 0.36 -1.4
3,577 + GFF4766 0.36 -0.5
3,578 - GFF4766 0.36 +0.9
3,592 + GFF4766 0.38 -0.3
3,593 - GFF4766 0.38 -0.5
3,593 - GFF4766 0.38 -0.0
3,593 - GFF4766 0.38 -0.0
3,854 - GFF4766 0.71 -1.9
4,003 + +0.3
4,003 + +0.9
4,003 + +0.6
4,003 + -0.3
4,003 + -1.1
4,004 - +0.1
4,004 - -0.5
4,004 - -0.7
4,054 + -0.5
4,054 + -0.7
4,283 + -0.7
4,405 + GFF4767 0.15 -0.9
4,406 - GFF4767 0.15 -1.0
4,406 - GFF4767 0.15 -1.0
4,440 - GFF4767 0.17 -1.0
4,440 - GFF4767 0.17 -0.7
4,440 - GFF4767 0.17 +0.5
4,440 - GFF4767 0.17 -1.1
4,440 - GFF4767 0.17 +0.4
4,454 - GFF4767 0.17 +0.4
4,523 + GFF4767 0.22 -1.0
4,523 + GFF4767 0.22 +0.4
4,524 - GFF4767 0.22 +0.5
4,557 + GFF4767 0.24 +0.3
4,557 + GFF4767 0.24 +0.1
4,557 + GFF4767 0.24 +0.5
4,558 - GFF4767 0.24 +1.4
4,558 - GFF4767 0.24 +0.7
4,558 - GFF4767 0.24 -0.1
4,562 + GFF4767 0.24 -0.5
4,562 + GFF4767 0.24 -1.1
4,611 - GFF4767 0.27 +1.0
4,836 - GFF4767 0.41 +0.1
5,027 + GFF4767 0.52 -0.7
5,027 + GFF4767 0.52 +0.0
5,027 + GFF4767 0.52 -0.0
5,027 + GFF4767 0.52 -0.1
5,027 + GFF4767 0.52 -0.3
5,027 + GFF4767 0.52 +0.3
5,027 + GFF4767 0.52 -0.3
5,027 + GFF4767 0.52 +1.4
5,027 + GFF4767 0.52 -0.1
5,028 - GFF4767 0.52 +0.1
5,028 - GFF4767 0.52 -0.9
5,028 - GFF4767 0.52 +0.9
5,028 - GFF4767 0.52 -1.4
5,028 - GFF4767 0.52 +0.1
5,028 - GFF4767 0.52 -2.7
5,028 - GFF4767 0.52 +1.2
5,028 - GFF4767 0.52 +0.3
5,028 - GFF4767 0.52 -1.0
5,138 + GFF4767 0.59 -0.7
5,138 + GFF4767 0.59 -0.7
5,139 - GFF4767 0.59 -1.3
5,139 - GFF4767 0.59 -0.8
5,139 - GFF4767 0.59 -0.3
5,213 + GFF4767 0.63 +0.4
5,213 + GFF4767 0.63 -1.8
5,213 + GFF4767 0.63 -0.7
5,213 + GFF4767 0.63 +0.3
5,214 - GFF4767 0.63 +0.2
5,214 - GFF4767 0.63 +2.3
5,252 + GFF4767 0.66 +0.7
5,252 + GFF4767 0.66 -0.2
5,252 + GFF4767 0.66 -0.8
5,253 - GFF4767 0.66 +0.3
5,253 - GFF4767 0.66 +0.1
5,381 - GFF4767 0.74 -1.6
5,382 + GFF4767 0.74 -1.7
5,682 + +0.3
5,682 + +1.1
5,683 - +1.4
5,683 - +1.3
5,683 - -0.6
5,684 + -2.4
5,684 + +0.9
5,685 - -0.3
5,699 + +0.1
5,700 - +0.4
5,704 - +0.2
5,804 + -0.4
5,804 + -0.3
5,804 + +0.1
5,804 + -0.5
5,804 + +0.4
5,804 + +0.2
5,804 + +0.1
5,804 + -0.3
5,804 + -0.1
5,805 - +0.6
5,805 - +0.6
5,805 - -0.3
5,805 - +1.0
5,805 - +2.0
5,805 - -0.4
5,805 - -0.2
5,805 - +0.7
5,805 - +0.1
5,805 - -0.3
5,946 + +0.2
6,027 + +0.5
6,027 + +1.6
6,027 + -0.4
6,027 + -0.3
6,027 + -0.1
6,028 - -0.2
6,028 - -1.0
6,028 - +0.3
6,028 - +0.1
6,028 - +0.1
6,028 - -0.4
6,057 + GFF4768 0.11 +0.5
6,059 + GFF4768 0.11 +0.3
6,303 + GFF4768 0.23 +0.4
6,304 - GFF4768 0.24 -0.2
6,390 + GFF4768 0.28 -0.3
6,390 + GFF4768 0.28 -0.5
6,390 + GFF4768 0.28 +1.1
6,390 + GFF4768 0.28 +1.9
6,556 - GFF4768 0.36 +0.4
6,639 + GFF4768 0.40 +0.6
6,639 + GFF4768 0.40 -0.3
6,639 + GFF4768 0.40 -1.4
6,640 - GFF4768 0.40 -1.4
6,640 - GFF4768 0.40 +0.4
6,640 - GFF4768 0.40 -1.5

Or see this region's nucleotide sequence