Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4753 and GFF4754 are separated by 85 nucleotides GFF4754 and GFF4755 are separated by 14 nucleotides GFF4755 and GFF4756 are separated by 10 nucleotides GFF4756 and GFF4757 are separated by 2 nucleotides
GFF4753 - hypothetical protein, at 166,868 to 167,332
GFF4753
GFF4754 - hypothetical protein, at 167,418 to 168,296
GFF4754
GFF4755 - Inner membrane ABC transporter permease protein YdcV, at 168,311 to 169,114
GFF4755
GFF4756 - Putrescine transport system permease protein PotH, at 169,125 to 169,982
GFF4756
GFF4757 - hypothetical protein, at 169,985 to 171,031
GFF4757
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 167.336 kb on - strand at 167.336 kb on - strand at 167.431 kb on + strand at 167.432 kb on - strand at 167.440 kb on + strand at 167.440 kb on + strand at 167.440 kb on + strand at 167.440 kb on + strand at 167.441 kb on - strand at 167.441 kb on - strand at 167.441 kb on - strand at 167.441 kb on - strand at 167.525 kb on - strand, within GFF4754 at 167.564 kb on - strand, within GFF4754 at 167.564 kb on - strand, within GFF4754 at 167.564 kb on - strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.591 kb on - strand, within GFF4754 at 167.591 kb on - strand, within GFF4754 at 167.655 kb on - strand, within GFF4754 at 167.936 kb on - strand, within GFF4754 at 167.953 kb on + strand, within GFF4754 at 167.953 kb on + strand, within GFF4754 at 168.441 kb on + strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.685 kb on + strand, within GFF4755 at 168.686 kb on - strand, within GFF4755 at 168.952 kb on - strand, within GFF4755 at 168.952 kb on - strand, within GFF4755 at 168.966 kb on + strand, within GFF4755 at 168.966 kb on + strand, within GFF4755 at 169.132 kb on + strand at 169.336 kb on + strand, within GFF4756 at 169.336 kb on + strand, within GFF4756 at 169.336 kb on + strand, within GFF4756 at 169.337 kb on - strand, within GFF4756 at 169.397 kb on - strand, within GFF4756 at 169.730 kb on - strand, within GFF4756 at 169.825 kb on + strand, within GFF4756 at 169.826 kb on - strand, within GFF4756
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 167,336 - -0.1 167,336 - +0.2 167,431 + -0.5 167,432 - -0.1 167,440 + -0.4 167,440 + +0.1 167,440 + -0.2 167,440 + -0.4 167,441 - +0.2 167,441 - +0.1 167,441 - +0.3 167,441 - +0.4 167,525 - GFF4754 0.12 -2.4 167,564 - GFF4754 0.17 -1.0 167,564 - GFF4754 0.17 +0.4 167,564 - GFF4754 0.17 +0.0 167,590 + GFF4754 0.20 +0.2 167,590 + GFF4754 0.20 -0.0 167,590 + GFF4754 0.20 -0.8 167,590 + GFF4754 0.20 -0.2 167,591 - GFF4754 0.20 -0.8 167,591 - GFF4754 0.20 +0.9 167,655 - GFF4754 0.27 +0.7 167,936 - GFF4754 0.59 -0.1 167,953 + GFF4754 0.61 -1.5 167,953 + GFF4754 0.61 -0.6 168,441 + GFF4755 0.16 +0.5 168,442 - GFF4755 0.16 +0.1 168,442 - GFF4755 0.16 -0.4 168,442 - GFF4755 0.16 +0.1 168,442 - GFF4755 0.16 -1.1 168,685 + GFF4755 0.47 -0.5 168,686 - GFF4755 0.47 -0.0 168,952 - GFF4755 0.80 +0.6 168,952 - GFF4755 0.80 -0.4 168,966 + GFF4755 0.81 +1.3 168,966 + GFF4755 0.81 +0.4 169,132 + -0.7 169,336 + GFF4756 0.25 +2.8 169,336 + GFF4756 0.25 +0.3 169,336 + GFF4756 0.25 +0.1 169,337 - GFF4756 0.25 -1.4 169,397 - GFF4756 0.32 +0.3 169,730 - GFF4756 0.71 -0.4 169,825 + GFF4756 0.82 -0.2 169,826 - GFF4756 0.82 +0.4
Or see this region's nucleotide sequence