Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4732 and GFF4733 are separated by 3 nucleotides GFF4733 and GFF4734 overlap by 14 nucleotides GFF4734 and GFF4735 are separated by 9 nucleotides
GFF4732 - GTP 3',8-cyclase, at 143,470 to 144,501
GFF4732
GFF4733 - hypothetical protein, at 144,505 to 145,341
GFF4733
GFF4734 - hypothetical protein, at 145,328 to 145,717
GFF4734
GFF4735 - Chaperone SurA, at 145,727 to 146,569
GFF4735
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1 at 143.846 kb on + strand, within GFF4732 at 143.847 kb on - strand, within GFF4732 at 144.422 kb on + strand at 144.758 kb on + strand, within GFF4733 at 144.758 kb on + strand, within GFF4733 at 144.759 kb on - strand, within GFF4733 at 144.759 kb on - strand, within GFF4733 at 144.759 kb on - strand, within GFF4733 at 144.759 kb on - strand, within GFF4733 at 144.759 kb on - strand, within GFF4733 at 144.924 kb on - strand, within GFF4733 at 144.924 kb on - strand, within GFF4733 at 145.019 kb on + strand, within GFF4733 at 145.019 kb on + strand, within GFF4733 at 145.020 kb on - strand, within GFF4733 at 145.581 kb on + strand, within GFF4734 at 145.581 kb on + strand, within GFF4734 at 145.602 kb on + strand, within GFF4734 at 145.728 kb on + strand at 145.729 kb on - strand at 145.803 kb on + strand at 145.803 kb on + strand at 145.803 kb on + strand at 145.803 kb on + strand at 146.196 kb on + strand, within GFF4735 at 146.196 kb on + strand, within GFF4735 at 146.197 kb on - strand, within GFF4735
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 143,846 + GFF4732 0.36 +0.1 143,847 - GFF4732 0.37 +0.1 144,422 + +0.5 144,758 + GFF4733 0.30 +0.6 144,758 + GFF4733 0.30 +0.1 144,759 - GFF4733 0.30 -0.5 144,759 - GFF4733 0.30 +0.2 144,759 - GFF4733 0.30 +0.3 144,759 - GFF4733 0.30 -0.0 144,759 - GFF4733 0.30 -1.8 144,924 - GFF4733 0.50 -0.4 144,924 - GFF4733 0.50 +0.3 145,019 + GFF4733 0.61 +0.4 145,019 + GFF4733 0.61 +0.0 145,020 - GFF4733 0.62 -0.2 145,581 + GFF4734 0.65 +0.7 145,581 + GFF4734 0.65 -0.5 145,602 + GFF4734 0.70 +0.4 145,728 + -0.2 145,729 - +0.7 145,803 + -0.0 145,803 + +0.8 145,803 + +0.4 145,803 + +0.9 146,196 + GFF4735 0.56 +0.3 146,196 + GFF4735 0.56 -0.1 146,197 - GFF4735 0.56 -1.1
Or see this region's nucleotide sequence