Strain Fitness in Xanthobacter sp. DMC5 around GFF4716

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4715 and GFF4716 overlap by 4 nucleotidesGFF4716 and GFF4717 overlap by 4 nucleotides GFF4715 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 127,248 to 128,468 GFF4715 GFF4716 - Ribosomal RNA large subunit methyltransferase E, at 128,465 to 129,193 GFF4716 GFF4717 - putative transport protein HsrA, at 129,190 to 130,629 GFF4717 Position (kb) 128 129 130Strain fitness (log2 ratio) -1 0 1 2 3at 128.206 kb on + strand, within GFF4715at 128.206 kb on + strand, within GFF4715at 128.206 kb on + strand, within GFF4715at 128.318 kb on + strand, within GFF4715at 129.191 kb on + strandat 129.192 kb on - strandat 129.313 kb on + strandat 129.645 kb on - strand, within GFF4717at 129.645 kb on - strand, within GFF4717at 129.899 kb on + strand, within GFF4717at 129.899 kb on + strand, within GFF4717at 130.148 kb on + strand, within GFF4717at 130.149 kb on - strand, within GFF4717at 130.149 kb on - strand, within GFF4717

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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128,206 + GFF4715 0.78 +0.4
128,206 + GFF4715 0.78 -0.7
128,206 + GFF4715 0.78 -1.0
128,318 + GFF4715 0.88 -1.6
129,191 + +0.4
129,192 - -0.1
129,313 + +0.1
129,645 - GFF4717 0.32 +0.1
129,645 - GFF4717 0.32 +0.2
129,899 + GFF4717 0.49 -0.8
129,899 + GFF4717 0.49 -0.8
130,148 + GFF4717 0.67 +0.3
130,149 - GFF4717 0.67 -0.3
130,149 - GFF4717 0.67 +2.8

Or see this region's nucleotide sequence