Strain Fitness in Xanthobacter sp. DMC5 around GFF4698

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4697 and GFF4698 are separated by 485 nucleotidesGFF4698 and GFF4699 overlap by 4 nucleotides GFF4697 - Formate dehydrogenase-O major subunit, at 108,648 to 109,247 GFF4697 GFF4698 - hypothetical protein, at 109,733 to 110,296 GFF4698 GFF4699 - putative protein, at 110,293 to 111,417 GFF4699 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1at 109.005 kb on - strand, within GFF4697at 109.081 kb on + strand, within GFF4697at 109.081 kb on + strand, within GFF4697at 109.468 kb on + strandat 109.468 kb on + strandat 109.469 kb on - strandat 109.619 kb on - strandat 110.869 kb on + strand, within GFF4699at 110.870 kb on - strand, within GFF4699at 110.870 kb on - strand, within GFF4699at 111.263 kb on - strand, within GFF4699at 111.263 kb on - strand, within GFF4699

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
109,005 - GFF4697 0.59 +0.3
109,081 + GFF4697 0.72 -1.3
109,081 + GFF4697 0.72 -0.5
109,468 + +0.0
109,468 + -2.3
109,469 - -0.2
109,619 - +1.6
110,869 + GFF4699 0.51 -0.0
110,870 - GFF4699 0.51 -2.1
110,870 - GFF4699 0.51 +0.7
111,263 - GFF4699 0.86 +0.5
111,263 - GFF4699 0.86 -1.1

Or see this region's nucleotide sequence