Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4685 and GFF4686 are separated by 317 nucleotides GFF4686 and GFF4687 are separated by 52 nucleotides GFF4687 and GFF4688 are separated by 72 nucleotides
GFF4685 - HTH-type transcriptional regulator HdfR, at 93,972 to 94,862
GFF4685
GFF4686 - hypothetical protein, at 95,180 to 95,698
GFF4686
GFF4687 - hypothetical protein, at 95,751 to 96,071
GFF4687
GFF4688 - D-alanyl-D-alanine dipeptidase, at 96,144 to 96,830
GFF4688
Position (kb) 95
96 Strain fitness (log2 ratio) -1
0
1 at 94.464 kb on + strand, within GFF4685 at 94.865 kb on + strand at 94.866 kb on - strand at 94.905 kb on - strand at 94.930 kb on + strand at 94.930 kb on + strand at 95.174 kb on + strand at 95.294 kb on + strand, within GFF4686 at 95.476 kb on - strand, within GFF4686 at 95.794 kb on - strand, within GFF4687 at 95.794 kb on - strand, within GFF4687 at 95.798 kb on + strand, within GFF4687 at 95.798 kb on + strand, within GFF4687 at 95.798 kb on + strand, within GFF4687 at 95.799 kb on - strand, within GFF4687 at 96.105 kb on + strand at 96.105 kb on + strand at 96.106 kb on - strand at 96.106 kb on - strand at 96.282 kb on + strand, within GFF4688 at 96.282 kb on + strand, within GFF4688 at 96.324 kb on + strand, within GFF4688 at 96.504 kb on + strand, within GFF4688 at 96.504 kb on + strand, within GFF4688 at 96.504 kb on + strand, within GFF4688 at 96.504 kb on + strand, within GFF4688 at 96.546 kb on + strand, within GFF4688 at 96.546 kb on + strand, within GFF4688 at 96.546 kb on + strand, within GFF4688 at 96.547 kb on - strand, within GFF4688
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 94,464 + GFF4685 0.55 +0.1 94,865 + -1.1 94,866 - +0.4 94,905 - +0.4 94,930 + +0.7 94,930 + +0.3 95,174 + +0.1 95,294 + GFF4686 0.22 -1.1 95,476 - GFF4686 0.57 -1.2 95,794 - GFF4687 0.13 +0.3 95,794 - GFF4687 0.13 +0.2 95,798 + GFF4687 0.15 -0.1 95,798 + GFF4687 0.15 +0.6 95,798 + GFF4687 0.15 +0.0 95,799 - GFF4687 0.15 +0.5 96,105 + +0.2 96,105 + -1.0 96,106 - +0.3 96,106 - -0.5 96,282 + GFF4688 0.20 +0.3 96,282 + GFF4688 0.20 +0.6 96,324 + GFF4688 0.26 -0.3 96,504 + GFF4688 0.52 -1.0 96,504 + GFF4688 0.52 -0.0 96,504 + GFF4688 0.52 -0.5 96,504 + GFF4688 0.52 +0.6 96,546 + GFF4688 0.59 -0.8 96,546 + GFF4688 0.59 +0.2 96,546 + GFF4688 0.59 -0.8 96,547 - GFF4688 0.59 -0.7
Or see this region's nucleotide sequence