Strain Fitness in Xanthobacter sp. DMC5 around GFF4682

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4681 and GFF4682 are separated by 253 nucleotidesGFF4682 and GFF4683 are separated by 228 nucleotidesGFF4683 and GFF4684 are separated by 279 nucleotides GFF4681 - Carbamoyl-phosphate synthase large chain, at 87,705 to 91,151 GFF4681 GFF4682 - Transcription elongation factor GreA, at 91,405 to 91,863 GFF4682 GFF4683 - Leucine-responsive regulatory protein, at 92,092 to 92,577 GFF4683 GFF4684 - Thioredoxin reductase, at 92,857 to 93,819 GFF4684 Position (kb) 91 92Strain fitness (log2 ratio) -1 0 1at 92.636 kb on + strandat 92.651 kb on + strandat 92.652 kb on - strandat 92.661 kb on - strandat 92.759 kb on + strandat 92.759 kb on + strandat 92.760 kb on - strandat 92.793 kb on + strandat 92.794 kb on - strandat 92.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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92,636 + -0.8
92,651 + -0.1
92,652 - -0.4
92,661 - +1.0
92,759 + +0.8
92,759 + +0.2
92,760 - -1.2
92,793 + -0.4
92,794 - -0.6
92,794 - -0.6

Or see this region's nucleotide sequence