Strain Fitness in Xanthobacter sp. DMC5 around GFF4671

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4670 and GFF4671 are separated by 152 nucleotidesGFF4671 and GFF4672 are separated by 75 nucleotidesGFF4672 and GFF4673 are separated by 44 nucleotides GFF4670 - hypothetical protein, at 77,269 to 78,060 GFF4670 GFF4671 - UvrABC system protein B, at 78,213 to 80,906 GFF4671 GFF4672 - hypothetical protein, at 80,982 to 81,263 GFF4672 GFF4673 - hypothetical protein, at 81,308 to 81,715 GFF4673 Position (kb) 78 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 77.381 kb on + strand, within GFF4670at 77.396 kb on + strand, within GFF4670at 77.397 kb on - strand, within GFF4670at 77.432 kb on + strand, within GFF4670at 77.432 kb on + strand, within GFF4670at 77.433 kb on - strand, within GFF4670at 77.690 kb on + strand, within GFF4670at 77.690 kb on + strand, within GFF4670at 77.816 kb on + strand, within GFF4670at 77.816 kb on + strand, within GFF4670at 77.816 kb on + strand, within GFF4670at 77.816 kb on + strand, within GFF4670at 78.054 kb on + strandat 78.055 kb on - strandat 78.233 kb on + strandat 78.234 kb on - strandat 78.234 kb on - strandat 78.679 kb on + strand, within GFF4671at 78.717 kb on + strand, within GFF4671at 78.819 kb on + strand, within GFF4671at 78.933 kb on + strand, within GFF4671at 78.934 kb on - strand, within GFF4671at 78.934 kb on - strand, within GFF4671at 78.938 kb on + strand, within GFF4671at 78.958 kb on - strand, within GFF4671at 78.958 kb on - strand, within GFF4671at 79.039 kb on - strand, within GFF4671at 79.039 kb on - strand, within GFF4671at 79.116 kb on + strand, within GFF4671at 79.117 kb on - strand, within GFF4671at 79.227 kb on + strand, within GFF4671at 79.242 kb on + strand, within GFF4671at 79.243 kb on - strand, within GFF4671at 79.243 kb on - strand, within GFF4671at 79.243 kb on - strand, within GFF4671at 79.372 kb on - strand, within GFF4671at 79.422 kb on + strand, within GFF4671at 79.479 kb on + strand, within GFF4671at 79.549 kb on - strand, within GFF4671at 79.587 kb on + strand, within GFF4671at 79.890 kb on + strand, within GFF4671at 79.920 kb on + strand, within GFF4671at 79.920 kb on + strand, within GFF4671at 79.921 kb on - strand, within GFF4671at 80.155 kb on - strand, within GFF4671at 80.229 kb on + strand, within GFF4671at 80.229 kb on + strand, within GFF4671at 80.298 kb on + strand, within GFF4671at 80.556 kb on + strand, within GFF4671at 80.758 kb on + strandat 80.759 kb on - strandat 81.366 kb on + strand, within GFF4673at 81.367 kb on - strand, within GFF4673at 81.378 kb on - strand, within GFF4673at 81.415 kb on - strand, within GFF4673at 81.426 kb on + strand, within GFF4673at 81.426 kb on + strand, within GFF4673at 81.427 kb on - strand, within GFF4673at 81.519 kb on + strand, within GFF4673at 81.520 kb on - strand, within GFF4673at 81.520 kb on - strand, within GFF4673at 81.551 kb on - strand, within GFF4673at 81.551 kb on - strand, within GFF4673at 81.756 kb on + strandat 81.757 kb on - strandat 81.799 kb on + strandat 81.838 kb on + strandat 81.838 kb on + strandat 81.839 kb on - strandat 81.839 kb on - strandat 81.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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77,381 + GFF4670 0.14 -0.3
77,396 + GFF4670 0.16 -0.8
77,397 - GFF4670 0.16 +0.3
77,432 + GFF4670 0.21 +0.2
77,432 + GFF4670 0.21 +1.8
77,433 - GFF4670 0.21 -0.1
77,690 + GFF4670 0.53 -0.2
77,690 + GFF4670 0.53 +0.0
77,816 + GFF4670 0.69 +0.2
77,816 + GFF4670 0.69 -0.6
77,816 + GFF4670 0.69 -0.3
77,816 + GFF4670 0.69 -0.2
78,054 + -0.5
78,055 - -0.4
78,233 + +0.2
78,234 - -0.0
78,234 - -0.5
78,679 + GFF4671 0.17 -0.7
78,717 + GFF4671 0.19 +0.1
78,819 + GFF4671 0.22 -1.2
78,933 + GFF4671 0.27 -0.5
78,934 - GFF4671 0.27 -1.6
78,934 - GFF4671 0.27 -0.4
78,938 + GFF4671 0.27 -1.4
78,958 - GFF4671 0.28 +0.6
78,958 - GFF4671 0.28 +0.6
79,039 - GFF4671 0.31 +0.5
79,039 - GFF4671 0.31 +0.1
79,116 + GFF4671 0.34 +1.4
79,117 - GFF4671 0.34 -0.3
79,227 + GFF4671 0.38 -0.4
79,242 + GFF4671 0.38 +0.2
79,243 - GFF4671 0.38 +1.5
79,243 - GFF4671 0.38 -0.1
79,243 - GFF4671 0.38 -0.8
79,372 - GFF4671 0.43 -0.7
79,422 + GFF4671 0.45 -1.1
79,479 + GFF4671 0.47 +0.1
79,549 - GFF4671 0.50 -1.6
79,587 + GFF4671 0.51 +0.8
79,890 + GFF4671 0.62 +0.0
79,920 + GFF4671 0.63 -0.7
79,920 + GFF4671 0.63 -2.3
79,921 - GFF4671 0.63 +0.7
80,155 - GFF4671 0.72 -0.5
80,229 + GFF4671 0.75 -0.1
80,229 + GFF4671 0.75 +0.7
80,298 + GFF4671 0.77 -1.6
80,556 + GFF4671 0.87 -0.5
80,758 + +1.1
80,759 - -1.1
81,366 + GFF4673 0.14 +0.3
81,367 - GFF4673 0.14 -0.9
81,378 - GFF4673 0.17 +0.0
81,415 - GFF4673 0.26 -0.8
81,426 + GFF4673 0.29 +0.6
81,426 + GFF4673 0.29 +0.2
81,427 - GFF4673 0.29 +0.2
81,519 + GFF4673 0.52 -0.4
81,520 - GFF4673 0.52 -0.9
81,520 - GFF4673 0.52 -0.6
81,551 - GFF4673 0.60 -0.5
81,551 - GFF4673 0.60 -0.5
81,756 + -0.2
81,757 - +1.7
81,799 + -0.6
81,838 + -0.7
81,838 + -0.3
81,839 - -0.4
81,839 - -0.7
81,852 + +1.4

Or see this region's nucleotide sequence