Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4664 and GFF4665 are separated by 199 nucleotides GFF4665 and GFF4666 overlap by 17 nucleotides GFF4666 and GFF4667 are separated by 75 nucleotides
GFF4664 - Disulfide-bond oxidoreductase YfcG, at 72,013 to 72,651
GFF4664
GFF4665 - hypothetical protein, at 72,851 to 73,234
GFF4665
GFF4666 - Aldose sugar dehydrogenase YliI, at 73,218 to 74,456
GFF4666
GFF4667 - 8-oxoguanine deaminase, at 74,532 to 75,896
GFF4667
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 72.226 kb on + strand, within GFF4664 at 72.226 kb on + strand, within GFF4664 at 72.226 kb on + strand, within GFF4664 at 72.227 kb on - strand, within GFF4664 at 72.227 kb on - strand, within GFF4664 at 72.413 kb on - strand, within GFF4664 at 72.737 kb on - strand at 72.894 kb on - strand, within GFF4665 at 73.250 kb on + strand at 73.251 kb on - strand at 73.251 kb on - strand at 73.356 kb on - strand, within GFF4666 at 73.356 kb on - strand, within GFF4666 at 73.356 kb on - strand, within GFF4666 at 73.384 kb on - strand, within GFF4666 at 73.653 kb on + strand, within GFF4666 at 73.663 kb on - strand, within GFF4666 at 74.100 kb on + strand, within GFF4666 at 74.100 kb on + strand, within GFF4666 at 74.100 kb on + strand, within GFF4666 at 74.101 kb on - strand, within GFF4666 at 74.101 kb on - strand, within GFF4666 at 74.134 kb on - strand, within GFF4666 at 74.134 kb on - strand, within GFF4666 at 74.233 kb on - strand, within GFF4666 at 74.481 kb on + strand at 74.482 kb on - strand at 74.482 kb on - strand at 74.482 kb on - strand at 74.485 kb on + strand at 74.485 kb on + strand at 74.485 kb on + strand at 74.486 kb on - strand at 74.616 kb on + strand at 74.718 kb on - strand, within GFF4667 at 74.916 kb on + strand, within GFF4667 at 74.916 kb on + strand, within GFF4667 at 74.916 kb on + strand, within GFF4667 at 74.916 kb on + strand, within GFF4667 at 74.916 kb on + strand, within GFF4667 at 74.917 kb on - strand, within GFF4667 at 74.917 kb on - strand, within GFF4667 at 74.917 kb on - strand, within GFF4667 at 74.917 kb on - strand, within GFF4667 at 74.922 kb on + strand, within GFF4667 at 75.099 kb on + strand, within GFF4667 at 75.100 kb on - strand, within GFF4667 at 75.117 kb on + strand, within GFF4667 at 75.294 kb on + strand, within GFF4667 at 75.294 kb on + strand, within GFF4667 at 75.294 kb on + strand, within GFF4667 at 75.295 kb on - strand, within GFF4667 at 75.295 kb on - strand, within GFF4667 at 75.295 kb on - strand, within GFF4667 at 75.419 kb on + strand, within GFF4667 at 75.439 kb on + strand, within GFF4667 at 75.440 kb on - strand, within GFF4667
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 72,226 + GFF4664 0.33 +0.6 72,226 + GFF4664 0.33 -0.6 72,226 + GFF4664 0.33 +0.5 72,227 - GFF4664 0.33 +0.6 72,227 - GFF4664 0.33 +0.8 72,413 - GFF4664 0.63 +0.7 72,737 - +1.5 72,894 - GFF4665 0.11 +1.0 73,250 + +0.6 73,251 - +0.8 73,251 - -1.1 73,356 - GFF4666 0.11 -0.9 73,356 - GFF4666 0.11 -0.4 73,356 - GFF4666 0.11 +0.3 73,384 - GFF4666 0.13 +0.5 73,653 + GFF4666 0.35 +0.4 73,663 - GFF4666 0.36 -1.7 74,100 + GFF4666 0.71 -1.8 74,100 + GFF4666 0.71 +0.2 74,100 + GFF4666 0.71 +0.1 74,101 - GFF4666 0.71 -0.9 74,101 - GFF4666 0.71 -0.1 74,134 - GFF4666 0.74 -0.7 74,134 - GFF4666 0.74 +1.1 74,233 - GFF4666 0.82 +0.4 74,481 + -0.1 74,482 - +0.4 74,482 - -0.7 74,482 - -0.5 74,485 + -1.5 74,485 + +1.7 74,485 + +1.1 74,486 - +0.5 74,616 + -1.4 74,718 - GFF4667 0.14 +0.1 74,916 + GFF4667 0.28 +0.4 74,916 + GFF4667 0.28 -1.2 74,916 + GFF4667 0.28 -1.1 74,916 + GFF4667 0.28 +0.3 74,916 + GFF4667 0.28 +0.8 74,917 - GFF4667 0.28 +0.4 74,917 - GFF4667 0.28 +1.0 74,917 - GFF4667 0.28 -1.3 74,917 - GFF4667 0.28 -0.6 74,922 + GFF4667 0.29 +0.4 75,099 + GFF4667 0.42 -0.4 75,100 - GFF4667 0.42 -1.4 75,117 + GFF4667 0.43 -0.2 75,294 + GFF4667 0.56 -1.1 75,294 + GFF4667 0.56 +0.8 75,294 + GFF4667 0.56 +0.3 75,295 - GFF4667 0.56 -0.9 75,295 - GFF4667 0.56 -0.6 75,295 - GFF4667 0.56 +0.1 75,419 + GFF4667 0.65 -0.0 75,439 + GFF4667 0.66 -1.2 75,440 - GFF4667 0.67 -0.3
Or see this region's nucleotide sequence