Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4642 and GFF4643 are separated by 201 nucleotides GFF4643 and GFF4644 are separated by 7 nucleotides GFF4644 and GFF4645 are separated by 188 nucleotides
GFF4642 - Anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 52,347 to 53,699
GFF4642
GFF4643 - hypothetical protein, at 53,901 to 54,623
GFF4643
GFF4644 - hypothetical protein, at 54,631 to 55,068
GFF4644
GFF4645 - dTTP/UTP pyrophosphatase, at 55,257 to 55,877
GFF4645
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 52.939 kb on + strand, within GFF4642 at 53.094 kb on + strand, within GFF4642 at 53.094 kb on + strand, within GFF4642 at 53.095 kb on - strand, within GFF4642 at 53.141 kb on - strand, within GFF4642 at 53.344 kb on + strand, within GFF4642 at 53.345 kb on - strand, within GFF4642 at 53.540 kb on - strand, within GFF4642 at 53.567 kb on + strand at 53.615 kb on - strand at 53.615 kb on - strand at 53.644 kb on + strand at 53.662 kb on + strand at 53.662 kb on + strand at 53.663 kb on - strand at 53.671 kb on + strand at 53.672 kb on - strand at 53.824 kb on + strand at 53.824 kb on + strand at 53.824 kb on + strand at 53.825 kb on - strand at 54.856 kb on + strand, within GFF4644 at 54.857 kb on - strand, within GFF4644 at 54.878 kb on - strand, within GFF4644 at 54.936 kb on - strand, within GFF4644
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 52,939 + GFF4642 0.44 +0.7 53,094 + GFF4642 0.55 +0.0 53,094 + GFF4642 0.55 -0.7 53,095 - GFF4642 0.55 +0.7 53,141 - GFF4642 0.59 +0.8 53,344 + GFF4642 0.74 +1.1 53,345 - GFF4642 0.74 +1.1 53,540 - GFF4642 0.88 -0.1 53,567 + -2.2 53,615 - +0.2 53,615 - +0.3 53,644 + -0.4 53,662 + -0.7 53,662 + +0.1 53,663 - -0.7 53,671 + -1.3 53,672 - -0.2 53,824 + -0.6 53,824 + -0.5 53,824 + +1.0 53,825 - -1.0 54,856 + GFF4644 0.51 -0.5 54,857 - GFF4644 0.52 +0.4 54,878 - GFF4644 0.56 -1.8 54,936 - GFF4644 0.70 +0.0
Or see this region's nucleotide sequence