Strain Fitness in Xanthobacter sp. DMC5 around GFF4630

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4628 and GFF4629 overlap by 4 nucleotidesGFF4629 and GFF4630 are separated by 35 nucleotidesGFF4630 and GFF4631 are separated by 47 nucleotidesGFF4631 and GFF4632 are separated by 8 nucleotides GFF4628 - Copper-exporting P-type ATPase, at 36,699 to 38,927 GFF4628 GFF4629 - hypothetical protein, at 38,924 to 39,118 GFF4629 GFF4630 - Riboflavin transporter RfnT, at 39,154 to 40,239 GFF4630 GFF4631 - Gluconate 5-dehydrogenase, at 40,287 to 41,042 GFF4631 GFF4632 - Trk system potassium uptake protein TrkI, at 41,051 to 42,559 GFF4632 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1 2at 40.749 kb on + strand, within GFF4631at 40.750 kb on - strand, within GFF4631at 40.989 kb on + strandat 40.989 kb on + strandat 40.990 kb on - strandat 41.026 kb on - strandat 41.026 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
40,749 + GFF4631 0.61 +0.3
40,750 - GFF4631 0.61 -0.2
40,989 + -0.1
40,989 + +1.1
40,990 - +0.5
41,026 - -1.3
41,026 - +1.8

Or see this region's nucleotide sequence