Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF461 and GFF462 are separated by 31 nucleotides GFF462 and GFF463 are separated by 185 nucleotides GFF463 and GFF464 overlap by 4 nucleotides GFF464 and GFF465 are separated by 5 nucleotides
GFF461 - hypothetical protein, at 489,243 to 489,767
GFF461
GFF462 - hypothetical protein, at 489,799 to 490,302
GFF462
GFF463 - hypothetical protein, at 490,488 to 491,861
GFF463
GFF464 - Response regulator UvrY, at 491,858 to 492,490
GFF464
GFF465 - Putative aminoacrylate peracid reductase RutC, at 492,496 to 492,888
GFF465
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 489.535 kb on + strand, within GFF461 at 489.733 kb on + strand at 489.733 kb on + strand at 489.733 kb on + strand at 489.884 kb on + strand, within GFF462 at 489.884 kb on + strand, within GFF462 at 489.885 kb on - strand, within GFF462 at 489.885 kb on - strand, within GFF462 at 490.041 kb on + strand, within GFF462 at 490.434 kb on + strand at 490.435 kb on - strand at 490.444 kb on + strand at 490.445 kb on - strand at 490.445 kb on - strand at 490.845 kb on + strand, within GFF463 at 490.845 kb on + strand, within GFF463 at 490.845 kb on + strand, within GFF463 at 490.846 kb on - strand, within GFF463 at 490.846 kb on - strand, within GFF463 at 490.846 kb on - strand, within GFF463 at 490.871 kb on + strand, within GFF463 at 491.026 kb on - strand, within GFF463 at 491.979 kb on - strand, within GFF464 at 492.161 kb on + strand, within GFF464 at 492.161 kb on + strand, within GFF464 at 492.162 kb on - strand, within GFF464 at 492.629 kb on + strand, within GFF465 at 492.630 kb on - strand, within GFF465 at 492.630 kb on - strand, within GFF465 at 492.794 kb on + strand, within GFF465 at 492.795 kb on - strand, within GFF465
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 489,535 + GFF461 0.56 +0.8 489,733 + +0.1 489,733 + -0.3 489,733 + +0.9 489,884 + GFF462 0.17 -0.3 489,884 + GFF462 0.17 +0.8 489,885 - GFF462 0.17 -0.3 489,885 - GFF462 0.17 -0.6 490,041 + GFF462 0.48 +0.3 490,434 + +0.4 490,435 - +1.6 490,444 + -0.1 490,445 - -2.1 490,445 - -1.4 490,845 + GFF463 0.26 -0.1 490,845 + GFF463 0.26 +0.1 490,845 + GFF463 0.26 -0.4 490,846 - GFF463 0.26 -0.9 490,846 - GFF463 0.26 -0.7 490,846 - GFF463 0.26 -1.2 490,871 + GFF463 0.28 -0.2 491,026 - GFF463 0.39 -0.6 491,979 - GFF464 0.19 +1.6 492,161 + GFF464 0.48 +0.6 492,161 + GFF464 0.48 +0.9 492,162 - GFF464 0.48 -0.3 492,629 + GFF465 0.34 +0.4 492,630 - GFF465 0.34 -0.8 492,630 - GFF465 0.34 -1.3 492,794 + GFF465 0.76 -1.0 492,795 - GFF465 0.76 -2.7
Or see this region's nucleotide sequence