Strain Fitness in Xanthobacter sp. DMC5 around GFF4627

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4626 and GFF4627 are separated by 26 nucleotidesGFF4627 and GFF4628 are separated by 217 nucleotides GFF4626 - hypothetical protein, at 34,473 to 35,936 GFF4626 GFF4627 - hypothetical protein, at 35,963 to 36,481 GFF4627 GFF4628 - Copper-exporting P-type ATPase, at 36,699 to 38,927 GFF4628 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1at 35.092 kb on - strand, within GFF4626at 35.673 kb on + strand, within GFF4626at 36.575 kb on + strandat 36.575 kb on + strandat 36.615 kb on + strandat 36.624 kb on + strandat 36.624 kb on + strandat 36.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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35,092 - GFF4626 0.42 +0.4
35,673 + GFF4626 0.82 +0.4
36,575 + +1.5
36,575 + -0.8
36,615 + -0.4
36,624 + +0.7
36,624 + +0.7
36,717 + -0.6

Or see this region's nucleotide sequence