Strain Fitness in Xanthobacter sp. DMC5 around GFF4623

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4622 and GFF4623 are separated by 10 nucleotidesGFF4623 and GFF4624 are separated by 3 nucleotidesGFF4624 and GFF4625 are separated by 4 nucleotides GFF4622 - Cytochrome c oxidase subunit 1 , bacteroid, at 30,722 to 32,386 GFF4622 GFF4623 - hypothetical protein, at 32,397 to 33,146 GFF4623 GFF4624 - hypothetical protein, at 33,150 to 33,311 GFF4624 GFF4625 - Cbb3-type cytochrome c oxidase subunit FixP, at 33,316 to 34,197 GFF4625 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.523 kb on + strand, within GFF4622at 31.523 kb on + strand, within GFF4622at 33.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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31,523 + GFF4622 0.48 -1.4
31,523 + GFF4622 0.48 -1.2
33,162 + -0.1

Or see this region's nucleotide sequence