Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4621 and GFF4622 are separated by 314 nucleotides GFF4622 and GFF4623 are separated by 10 nucleotides GFF4623 and GFF4624 are separated by 3 nucleotides GFF4624 and GFF4625 are separated by 4 nucleotides
GFF4621 - putative multidrug ABC transporter permease YbhS, at 29,271 to 30,407
GFF4621
GFF4622 - Cytochrome c oxidase subunit 1 , bacteroid, at 30,722 to 32,386
GFF4622
GFF4623 - hypothetical protein, at 32,397 to 33,146
GFF4623
GFF4624 - hypothetical protein, at 33,150 to 33,311
GFF4624
GFF4625 - Cbb3-type cytochrome c oxidase subunit FixP, at 33,316 to 34,197
GFF4625
Position (kb) 30
31
32
33 Strain fitness (log2 ratio) -2
-1
0
1 at 29.794 kb on - strand, within GFF4621 at 30.114 kb on + strand, within GFF4621 at 30.114 kb on + strand, within GFF4621 at 30.115 kb on - strand, within GFF4621 at 30.373 kb on + strand at 30.469 kb on - strand at 30.621 kb on + strand at 30.666 kb on + strand at 30.666 kb on + strand at 30.667 kb on - strand at 30.869 kb on + strand at 30.869 kb on + strand at 30.974 kb on + strand, within GFF4622 at 31.523 kb on + strand, within GFF4622 at 31.523 kb on + strand, within GFF4622 at 33.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 29,794 - GFF4621 0.46 +0.0 30,114 + GFF4621 0.74 -2.0 30,114 + GFF4621 0.74 +0.4 30,115 - GFF4621 0.74 +0.0 30,373 + -1.8 30,469 - +0.7 30,621 + +1.2 30,666 + -0.4 30,666 + +0.2 30,667 - -1.4 30,869 + -0.2 30,869 + +1.4 30,974 + GFF4622 0.15 +0.4 31,523 + GFF4622 0.48 -1.4 31,523 + GFF4622 0.48 -1.2 33,162 + -0.1
Or see this region's nucleotide sequence