Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4611 and GFF4612 are separated by 22 nucleotides GFF4612 and GFF4613 are separated by 92 nucleotides GFF4613 and GFF4614 are separated by 204 nucleotides
GFF4611 - Ribosomal RNA small subunit methyltransferase B, at 20,082 to 21,383
GFF4611
GFF4612 - Futalosine hydrolase, at 21,406 to 22,068
GFF4612
GFF4613 - hypothetical protein, at 22,161 to 22,520
GFF4613
GFF4614 - hypothetical protein, at 22,725 to 23,234
GFF4614
Position (kb) 21
22
23 Strain fitness (log2 ratio) -1
0
1 at 20.608 kb on + strand, within GFF4611 at 20.608 kb on + strand, within GFF4611 at 20.622 kb on - strand, within GFF4611 at 21.007 kb on + strand, within GFF4611 at 21.232 kb on + strand, within GFF4611 at 21.504 kb on - strand, within GFF4612 at 21.648 kb on - strand, within GFF4612 at 21.648 kb on - strand, within GFF4612 at 21.798 kb on - strand, within GFF4612 at 21.946 kb on + strand, within GFF4612 at 21.992 kb on + strand, within GFF4612 at 21.993 kb on - strand, within GFF4612 at 22.388 kb on - strand, within GFF4613 at 22.553 kb on - strand at 22.553 kb on - strand at 22.897 kb on + strand, within GFF4614 at 22.911 kb on - strand, within GFF4614
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 20,608 + GFF4611 0.40 -0.0 20,608 + GFF4611 0.40 -1.0 20,622 - GFF4611 0.41 -0.7 21,007 + GFF4611 0.71 -0.3 21,232 + GFF4611 0.88 -1.1 21,504 - GFF4612 0.15 -0.3 21,648 - GFF4612 0.37 -1.1 21,648 - GFF4612 0.37 -1.4 21,798 - GFF4612 0.59 -0.2 21,946 + GFF4612 0.81 +0.1 21,992 + GFF4612 0.88 -0.4 21,993 - GFF4612 0.89 -1.1 22,388 - GFF4613 0.63 -0.1 22,553 - +0.1 22,553 - +0.2 22,897 + GFF4614 0.34 -0.8 22,911 - GFF4614 0.36 +0.4
Or see this region's nucleotide sequence