Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4607 and GFF4608 are separated by 266 nucleotides GFF4608 and GFF4609 are separated by 100 nucleotides GFF4609 and GFF4610 are separated by 109 nucleotides GFF4610 and GFF4611 are separated by 91 nucleotides
GFF4607 - putative GMC-type oxidoreductase, at 15,625 to 17,238
GFF4607
GFF4608 - HTH-type transcriptional repressor NicR, at 17,505 to 17,987
GFF4608
GFF4609 - GMP synthase [glutamine-hydrolyzing], at 18,088 to 19,656
GFF4609
GFF4610 - hypothetical protein, at 19,766 to 19,990
GFF4610
GFF4611 - Ribosomal RNA small subunit methyltransferase B, at 20,082 to 21,383
GFF4611
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 17.205 kb on - strand at 17.775 kb on - strand, within GFF4608 at 17.775 kb on - strand, within GFF4608 at 17.857 kb on + strand, within GFF4608 at 17.857 kb on + strand, within GFF4608 at 17.858 kb on - strand, within GFF4608 at 17.963 kb on + strand at 18.056 kb on + strand at 18.056 kb on + strand at 18.057 kb on - strand at 18.058 kb on + strand at 19.767 kb on + strand at 19.768 kb on - strand at 19.782 kb on + strand at 19.782 kb on + strand at 19.783 kb on - strand at 19.906 kb on - strand, within GFF4610 at 19.923 kb on + strand, within GFF4610 at 19.923 kb on + strand, within GFF4610 at 19.924 kb on - strand, within GFF4610 at 19.924 kb on - strand, within GFF4610 at 19.924 kb on - strand, within GFF4610 at 19.929 kb on + strand, within GFF4610 at 19.929 kb on + strand, within GFF4610 at 19.929 kb on + strand, within GFF4610 at 19.929 kb on + strand, within GFF4610 at 19.930 kb on - strand, within GFF4610 at 19.932 kb on + strand, within GFF4610 at 19.932 kb on + strand, within GFF4610 at 19.932 kb on + strand, within GFF4610 at 19.933 kb on - strand, within GFF4610 at 19.933 kb on - strand, within GFF4610 at 19.933 kb on - strand, within GFF4610 at 19.933 kb on - strand, within GFF4610 at 19.933 kb on - strand, within GFF4610 at 19.933 kb on - strand, within GFF4610 at 19.941 kb on + strand, within GFF4610 at 20.311 kb on + strand, within GFF4611 at 20.311 kb on + strand, within GFF4611 at 20.312 kb on - strand, within GFF4611 at 20.312 kb on - strand, within GFF4611 at 20.312 kb on - strand, within GFF4611 at 20.312 kb on - strand, within GFF4611 at 20.338 kb on + strand, within GFF4611 at 20.339 kb on - strand, within GFF4611 at 20.339 kb on - strand, within GFF4611 at 20.339 kb on - strand, within GFF4611 at 20.339 kb on - strand, within GFF4611 at 20.608 kb on + strand, within GFF4611 at 20.608 kb on + strand, within GFF4611 at 20.622 kb on - strand, within GFF4611
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 17,205 - -0.8 17,775 - GFF4608 0.56 +0.7 17,775 - GFF4608 0.56 -1.2 17,857 + GFF4608 0.73 -0.0 17,857 + GFF4608 0.73 +0.6 17,858 - GFF4608 0.73 +0.5 17,963 + +0.5 18,056 + -0.4 18,056 + +0.3 18,057 - +0.2 18,058 + +0.8 19,767 + -0.3 19,768 - +0.7 19,782 + +0.5 19,782 + -1.8 19,783 - -0.4 19,906 - GFF4610 0.62 +0.1 19,923 + GFF4610 0.70 -0.3 19,923 + GFF4610 0.70 -0.1 19,924 - GFF4610 0.70 -0.5 19,924 - GFF4610 0.70 +0.3 19,924 - GFF4610 0.70 -0.6 19,929 + GFF4610 0.72 +1.2 19,929 + GFF4610 0.72 -0.8 19,929 + GFF4610 0.72 -0.7 19,929 + GFF4610 0.72 +0.0 19,930 - GFF4610 0.73 +0.8 19,932 + GFF4610 0.74 -1.5 19,932 + GFF4610 0.74 -0.4 19,932 + GFF4610 0.74 +0.9 19,933 - GFF4610 0.74 -0.7 19,933 - GFF4610 0.74 -0.8 19,933 - GFF4610 0.74 +0.0 19,933 - GFF4610 0.74 +1.4 19,933 - GFF4610 0.74 +0.7 19,933 - GFF4610 0.74 +0.4 19,941 + GFF4610 0.78 -0.6 20,311 + GFF4611 0.18 -0.8 20,311 + GFF4611 0.18 +0.4 20,312 - GFF4611 0.18 +0.4 20,312 - GFF4611 0.18 -0.1 20,312 - GFF4611 0.18 +1.2 20,312 - GFF4611 0.18 +0.9 20,338 + GFF4611 0.20 -0.6 20,339 - GFF4611 0.20 +0.1 20,339 - GFF4611 0.20 -1.8 20,339 - GFF4611 0.20 -2.3 20,339 - GFF4611 0.20 -0.6 20,608 + GFF4611 0.40 -0.0 20,608 + GFF4611 0.40 -1.0 20,622 - GFF4611 0.41 -0.7
Or see this region's nucleotide sequence