Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4606 and GFF4607 overlap by 4 nucleotides GFF4607 and GFF4608 are separated by 266 nucleotides GFF4608 and GFF4609 are separated by 100 nucleotides
GFF4606 - Benzaldehyde dehydrogenase YfmT, at 14,153 to 15,628
GFF4606
GFF4607 - putative GMC-type oxidoreductase, at 15,625 to 17,238
GFF4607
GFF4608 - HTH-type transcriptional repressor NicR, at 17,505 to 17,987
GFF4608
GFF4609 - GMP synthase [glutamine-hydrolyzing], at 18,088 to 19,656
GFF4609
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -1
0
1 at 14.664 kb on - strand, within GFF4606 at 14.774 kb on + strand, within GFF4606 at 14.803 kb on - strand, within GFF4606 at 15.286 kb on - strand, within GFF4606 at 15.286 kb on - strand, within GFF4606 at 15.286 kb on - strand, within GFF4606 at 15.585 kb on + strand at 15.586 kb on - strand at 15.612 kb on + strand at 15.612 kb on + strand at 15.612 kb on + strand at 15.870 kb on - strand, within GFF4607 at 16.160 kb on + strand, within GFF4607 at 16.161 kb on - strand, within GFF4607 at 16.299 kb on - strand, within GFF4607 at 16.607 kb on + strand, within GFF4607 at 16.607 kb on + strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.608 kb on - strand, within GFF4607 at 16.660 kb on + strand, within GFF4607 at 16.850 kb on + strand, within GFF4607 at 16.850 kb on + strand, within GFF4607 at 16.851 kb on - strand, within GFF4607 at 16.851 kb on - strand, within GFF4607 at 16.872 kb on - strand, within GFF4607 at 17.082 kb on + strand at 17.205 kb on - strand at 17.775 kb on - strand, within GFF4608 at 17.775 kb on - strand, within GFF4608 at 17.857 kb on + strand, within GFF4608 at 17.857 kb on + strand, within GFF4608 at 17.858 kb on - strand, within GFF4608 at 17.963 kb on + strand at 18.056 kb on + strand at 18.056 kb on + strand at 18.057 kb on - strand at 18.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 14,664 - GFF4606 0.35 -0.0 14,774 + GFF4606 0.42 +0.2 14,803 - GFF4606 0.44 -1.0 15,286 - GFF4606 0.77 -0.8 15,286 - GFF4606 0.77 +0.2 15,286 - GFF4606 0.77 +0.9 15,585 + -0.2 15,586 - +0.4 15,612 + +0.7 15,612 + -0.7 15,612 + +1.3 15,870 - GFF4607 0.15 +0.4 16,160 + GFF4607 0.33 +0.3 16,161 - GFF4607 0.33 +0.5 16,299 - GFF4607 0.42 -0.2 16,607 + GFF4607 0.61 -0.5 16,607 + GFF4607 0.61 +0.4 16,608 - GFF4607 0.61 +0.2 16,608 - GFF4607 0.61 +0.9 16,608 - GFF4607 0.61 -1.3 16,608 - GFF4607 0.61 +0.8 16,660 + GFF4607 0.64 +0.1 16,850 + GFF4607 0.76 +0.3 16,850 + GFF4607 0.76 +0.6 16,851 - GFF4607 0.76 +0.9 16,851 - GFF4607 0.76 -0.9 16,872 - GFF4607 0.77 -0.7 17,082 + -0.4 17,205 - -0.8 17,775 - GFF4608 0.56 +0.7 17,775 - GFF4608 0.56 -1.2 17,857 + GFF4608 0.73 -0.0 17,857 + GFF4608 0.73 +0.6 17,858 - GFF4608 0.73 +0.5 17,963 + +0.5 18,056 + -0.4 18,056 + +0.3 18,057 - +0.2 18,058 + +0.8
Or see this region's nucleotide sequence