Strain Fitness in Xanthobacter sp. DMC5 around GFF4589

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4588 and GFF4589 are separated by 4 nucleotides GFF4588 - FeS cluster assembly protein SufD, at 177,380 to 178,723 GFF4588 GFF4589 - Cysteine desulfurase, at 178,728 to 179,993 GFF4589 Position (kb) 178 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 177.806 kb on + strand, within GFF4588at 177.806 kb on + strand, within GFF4588at 177.806 kb on + strand, within GFF4588at 177.806 kb on + strand, within GFF4588at 177.807 kb on - strand, within GFF4588at 177.807 kb on - strand, within GFF4588at 177.807 kb on - strand, within GFF4588at 177.807 kb on - strand, within GFF4588at 178.043 kb on + strand, within GFF4588at 178.044 kb on - strand, within GFF4588at 178.044 kb on - strand, within GFF4588at 178.054 kb on + strand, within GFF4588at 178.054 kb on + strand, within GFF4588at 178.054 kb on + strand, within GFF4588at 178.054 kb on + strand, within GFF4588at 178.054 kb on + strand, within GFF4588at 178.574 kb on + strand, within GFF4588at 178.575 kb on - strand, within GFF4588at 178.591 kb on + strandat 178.592 kb on - strandat 178.779 kb on + strandat 178.780 kb on - strandat 178.780 kb on - strandat 178.780 kb on - strandat 178.849 kb on - strandat 178.911 kb on + strand, within GFF4589at 178.911 kb on + strand, within GFF4589at 178.911 kb on + strand, within GFF4589at 178.911 kb on + strand, within GFF4589at 178.911 kb on + strand, within GFF4589at 178.911 kb on + strand, within GFF4589at 178.912 kb on - strand, within GFF4589at 178.912 kb on - strand, within GFF4589at 178.912 kb on - strand, within GFF4589at 178.912 kb on - strand, within GFF4589at 178.912 kb on - strand, within GFF4589at 178.912 kb on - strand, within GFF4589at 178.923 kb on + strand, within GFF4589at 178.924 kb on - strand, within GFF4589at 178.950 kb on + strand, within GFF4589at 178.950 kb on + strand, within GFF4589at 178.951 kb on - strand, within GFF4589at 178.977 kb on + strand, within GFF4589at 178.977 kb on + strand, within GFF4589at 178.977 kb on + strand, within GFF4589at 178.977 kb on + strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 178.978 kb on - strand, within GFF4589at 179.048 kb on + strand, within GFF4589at 179.151 kb on - strand, within GFF4589at 179.430 kb on + strand, within GFF4589at 179.430 kb on + strand, within GFF4589at 179.431 kb on - strand, within GFF4589at 179.431 kb on - strand, within GFF4589at 179.431 kb on - strand, within GFF4589at 179.454 kb on + strand, within GFF4589at 179.454 kb on + strand, within GFF4589at 179.455 kb on - strand, within GFF4589at 179.455 kb on - strand, within GFF4589at 179.455 kb on - strand, within GFF4589at 179.455 kb on - strand, within GFF4589at 179.455 kb on - strand, within GFF4589at 179.490 kb on + strand, within GFF4589at 179.490 kb on + strand, within GFF4589at 179.490 kb on + strand, within GFF4589at 179.490 kb on + strand, within GFF4589at 179.491 kb on - strand, within GFF4589at 179.491 kb on - strand, within GFF4589at 179.491 kb on - strand, within GFF4589at 179.491 kb on - strand, within GFF4589at 179.491 kb on - strand, within GFF4589at 179.491 kb on - strand, within GFF4589at 179.568 kb on + strand, within GFF4589at 179.568 kb on + strand, within GFF4589at 179.647 kb on - strand, within GFF4589at 179.647 kb on - strand, within GFF4589at 179.925 kb on + strandat 179.925 kb on + strandat 179.925 kb on + strandat 179.926 kb on - strandat 180.185 kb on + strandat 180.186 kb on - strandat 180.238 kb on + strandat 180.239 kb on - strandat 180.305 kb on + strandat 180.305 kb on + strandat 180.305 kb on + strandat 180.306 kb on - strandat 180.306 kb on - strandat 180.306 kb on - strandat 180.306 kb on - strandat 180.306 kb on - strandat 180.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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177,806 + GFF4588 0.32 +0.8
177,806 + GFF4588 0.32 -0.9
177,806 + GFF4588 0.32 +0.5
177,806 + GFF4588 0.32 -0.8
177,807 - GFF4588 0.32 -0.3
177,807 - GFF4588 0.32 -3.1
177,807 - GFF4588 0.32 +0.6
177,807 - GFF4588 0.32 +0.4
178,043 + GFF4588 0.49 +0.6
178,044 - GFF4588 0.49 -0.3
178,044 - GFF4588 0.49 +0.4
178,054 + GFF4588 0.50 +0.6
178,054 + GFF4588 0.50 +0.0
178,054 + GFF4588 0.50 +1.0
178,054 + GFF4588 0.50 -1.1
178,054 + GFF4588 0.50 +0.5
178,574 + GFF4588 0.89 -1.4
178,575 - GFF4588 0.89 +1.3
178,591 + +0.5
178,592 - +0.2
178,779 + -0.1
178,780 - +0.0
178,780 - +0.4
178,780 - +0.2
178,849 - -1.7
178,911 + GFF4589 0.14 +0.6
178,911 + GFF4589 0.14 +0.1
178,911 + GFF4589 0.14 +1.0
178,911 + GFF4589 0.14 +0.2
178,911 + GFF4589 0.14 -2.4
178,911 + GFF4589 0.14 +0.5
178,912 - GFF4589 0.15 +1.2
178,912 - GFF4589 0.15 -0.7
178,912 - GFF4589 0.15 -0.2
178,912 - GFF4589 0.15 -0.3
178,912 - GFF4589 0.15 -0.1
178,912 - GFF4589 0.15 -0.3
178,923 + GFF4589 0.15 -2.0
178,924 - GFF4589 0.15 +0.7
178,950 + GFF4589 0.18 +0.4
178,950 + GFF4589 0.18 +0.3
178,951 - GFF4589 0.18 -0.4
178,977 + GFF4589 0.20 -0.4
178,977 + GFF4589 0.20 +0.1
178,977 + GFF4589 0.20 -0.4
178,977 + GFF4589 0.20 +0.9
178,978 - GFF4589 0.20 -1.2
178,978 - GFF4589 0.20 +0.6
178,978 - GFF4589 0.20 +1.0
178,978 - GFF4589 0.20 -0.9
178,978 - GFF4589 0.20 +0.8
178,978 - GFF4589 0.20 -1.0
178,978 - GFF4589 0.20 -0.2
178,978 - GFF4589 0.20 +0.3
179,048 + GFF4589 0.25 +0.6
179,151 - GFF4589 0.33 -2.1
179,430 + GFF4589 0.55 +0.2
179,430 + GFF4589 0.55 +0.6
179,431 - GFF4589 0.56 -0.7
179,431 - GFF4589 0.56 +0.0
179,431 - GFF4589 0.56 +0.8
179,454 + GFF4589 0.57 -0.6
179,454 + GFF4589 0.57 +0.5
179,455 - GFF4589 0.57 +0.1
179,455 - GFF4589 0.57 -0.1
179,455 - GFF4589 0.57 -0.1
179,455 - GFF4589 0.57 -0.3
179,455 - GFF4589 0.57 -0.4
179,490 + GFF4589 0.60 -1.1
179,490 + GFF4589 0.60 -0.4
179,490 + GFF4589 0.60 +0.1
179,490 + GFF4589 0.60 +1.9
179,491 - GFF4589 0.60 +1.3
179,491 - GFF4589 0.60 +0.4
179,491 - GFF4589 0.60 +2.3
179,491 - GFF4589 0.60 +1.9
179,491 - GFF4589 0.60 +0.2
179,491 - GFF4589 0.60 -0.6
179,568 + GFF4589 0.66 +0.1
179,568 + GFF4589 0.66 +1.2
179,647 - GFF4589 0.73 -0.7
179,647 - GFF4589 0.73 +0.2
179,925 + +0.1
179,925 + -1.2
179,925 + +0.6
179,926 - -0.2
180,185 + -0.6
180,186 - -1.1
180,238 + +1.6
180,239 - +0.5
180,305 + +0.3
180,305 + +0.2
180,305 + -0.1
180,306 - +1.8
180,306 - +0.9
180,306 - +0.1
180,306 - -0.3
180,306 - +1.4
180,306 - +0.3

Or see this region's nucleotide sequence