Strain Fitness in Xanthobacter sp. DMC5 around GFF4585

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4584 and GFF4585 are separated by 287 nucleotidesGFF4585 and GFF4586 are separated by 240 nucleotides GFF4584 - Nif-specific regulatory protein, at 172,568 to 174,346 GFF4584 GFF4585 - Ferredoxin-1, at 174,634 to 174,828 GFF4585 GFF4586 - FeS cluster assembly protein SufB, at 175,069 to 176,553 GFF4586 Position (kb) 174 175Strain fitness (log2 ratio) -1 0 1at 173.681 kb on + strand, within GFF4584at 173.730 kb on - strand, within GFF4584at 173.730 kb on - strand, within GFF4584at 173.732 kb on + strand, within GFF4584at 173.870 kb on + strand, within GFF4584at 173.989 kb on + strand, within GFF4584at 174.057 kb on - strand, within GFF4584at 174.147 kb on + strand, within GFF4584at 174.147 kb on + strand, within GFF4584at 174.305 kb on + strandat 174.540 kb on + strandat 174.628 kb on + strandat 174.629 kb on - strandat 174.640 kb on + strandat 174.641 kb on - strandat 174.641 kb on - strandat 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.727 kb on + strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.728 kb on - strand, within GFF4585at 174.731 kb on + strand, within GFF4585at 174.732 kb on - strand, within GFF4585at 174.732 kb on - strand, within GFF4585at 174.810 kb on + strandat 174.811 kb on - strandat 174.811 kb on - strandat 174.982 kb on + strandat 174.982 kb on + strandat 175.079 kb on + strandat 175.079 kb on + strandat 175.080 kb on - strandat 175.123 kb on + strandat 175.124 kb on - strandat 175.124 kb on - strandat 175.124 kb on - strandat 175.129 kb on + strandat 175.252 kb on + strand, within GFF4586at 175.252 kb on + strand, within GFF4586at 175.252 kb on + strand, within GFF4586at 175.253 kb on - strand, within GFF4586at 175.253 kb on - strand, within GFF4586at 175.327 kb on + strand, within GFF4586at 175.328 kb on - strand, within GFF4586at 175.420 kb on - strand, within GFF4586at 175.559 kb on - strand, within GFF4586at 175.642 kb on + strand, within GFF4586at 175.690 kb on + strand, within GFF4586at 175.691 kb on - strand, within GFF4586at 175.693 kb on - strand, within GFF4586at 175.732 kb on + strand, within GFF4586at 175.732 kb on + strand, within GFF4586at 175.733 kb on - strand, within GFF4586at 175.756 kb on - strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.801 kb on + strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.802 kb on - strand, within GFF4586at 175.810 kb on + strand, within GFF4586

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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173,681 + GFF4584 0.63 -0.5
173,730 - GFF4584 0.65 +0.3
173,730 - GFF4584 0.65 +0.7
173,732 + GFF4584 0.65 -0.1
173,870 + GFF4584 0.73 +0.8
173,989 + GFF4584 0.80 +0.1
174,057 - GFF4584 0.84 -0.2
174,147 + GFF4584 0.89 -0.9
174,147 + GFF4584 0.89 -0.9
174,305 + +0.7
174,540 + +0.4
174,628 + +1.6
174,629 - -0.9
174,640 + +0.4
174,641 - +0.6
174,641 - +0.2
174,727 + GFF4585 0.48 -0.2
174,727 + GFF4585 0.48 +0.0
174,727 + GFF4585 0.48 +0.1
174,727 + GFF4585 0.48 +1.2
174,727 + GFF4585 0.48 +0.8
174,727 + GFF4585 0.48 +0.0
174,727 + GFF4585 0.48 +0.2
174,727 + GFF4585 0.48 -0.4
174,727 + GFF4585 0.48 -0.5
174,727 + GFF4585 0.48 +0.5
174,727 + GFF4585 0.48 +1.0
174,728 - GFF4585 0.48 +1.0
174,728 - GFF4585 0.48 +0.4
174,728 - GFF4585 0.48 +0.4
174,728 - GFF4585 0.48 +1.1
174,728 - GFF4585 0.48 -0.8
174,728 - GFF4585 0.48 +0.3
174,728 - GFF4585 0.48 +0.4
174,728 - GFF4585 0.48 +0.4
174,728 - GFF4585 0.48 -0.2
174,728 - GFF4585 0.48 -0.5
174,731 + GFF4585 0.50 +0.0
174,732 - GFF4585 0.50 +1.0
174,732 - GFF4585 0.50 +0.3
174,810 + -1.2
174,811 - -1.0
174,811 - +0.3
174,982 + -0.1
174,982 + +1.2
175,079 + +0.8
175,079 + +0.4
175,080 - -0.1
175,123 + -0.7
175,124 - +0.4
175,124 - -1.0
175,124 - -0.2
175,129 + -1.0
175,252 + GFF4586 0.12 +0.6
175,252 + GFF4586 0.12 +1.3
175,252 + GFF4586 0.12 +1.4
175,253 - GFF4586 0.12 +0.7
175,253 - GFF4586 0.12 -1.1
175,327 + GFF4586 0.17 +0.1
175,328 - GFF4586 0.17 -0.5
175,420 - GFF4586 0.24 +0.1
175,559 - GFF4586 0.33 +0.5
175,642 + GFF4586 0.39 +0.1
175,690 + GFF4586 0.42 -1.2
175,691 - GFF4586 0.42 +0.5
175,693 - GFF4586 0.42 +1.1
175,732 + GFF4586 0.45 -0.1
175,732 + GFF4586 0.45 -0.6
175,733 - GFF4586 0.45 +0.6
175,756 - GFF4586 0.46 +0.5
175,801 + GFF4586 0.49 -0.9
175,801 + GFF4586 0.49 -0.9
175,801 + GFF4586 0.49 -0.2
175,801 + GFF4586 0.49 +0.8
175,801 + GFF4586 0.49 +0.0
175,801 + GFF4586 0.49 +1.0
175,801 + GFF4586 0.49 +0.6
175,802 - GFF4586 0.49 +1.5
175,802 - GFF4586 0.49 +1.1
175,802 - GFF4586 0.49 -0.3
175,802 - GFF4586 0.49 -0.0
175,802 - GFF4586 0.49 +1.5
175,810 + GFF4586 0.50 -0.3

Or see this region's nucleotide sequence