Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4580 and GFF4581 are separated by 74 nucleotides GFF4581 and GFF4582 overlap by 4 nucleotides GFF4582 and GFF4583 are separated by 297 nucleotides
GFF4580 - HTH-type transcriptional regulator CymR, at 167,361 to 167,801
GFF4580
GFF4581 - Deoxyuridine 5'-triphosphate nucleotidohydrolase, at 167,876 to 168,340
GFF4581
GFF4582 - Coenzyme A biosynthesis bifunctional protein CoaBC, at 168,337 to 169,554
GFF4582
GFF4583 - hypothetical protein, at 169,852 to 172,221
GFF4583
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1 at 167.820 kb on + strand at 167.821 kb on - strand at 168.335 kb on - strand at 168.335 kb on - strand at 169.641 kb on + strand at 169.783 kb on + strand at 169.783 kb on + strand at 169.783 kb on + strand at 169.790 kb on - strand at 169.790 kb on - strand at 169.860 kb on + strand at 169.860 kb on + strand at 170.182 kb on + strand, within GFF4583 at 170.182 kb on + strand, within GFF4583 at 170.182 kb on + strand, within GFF4583 at 170.182 kb on + strand, within GFF4583 at 170.183 kb on - strand, within GFF4583 at 170.183 kb on - strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.353 kb on + strand, within GFF4583 at 170.427 kb on + strand, within GFF4583 at 170.427 kb on + strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.428 kb on - strand, within GFF4583
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 167,820 + -1.8 167,821 - -0.8 168,335 - -0.3 168,335 - +1.2 169,641 + +0.7 169,783 + +1.4 169,783 + -1.2 169,783 + -0.1 169,790 - +0.5 169,790 - +0.2 169,860 + -0.1 169,860 + -2.3 170,182 + GFF4583 0.14 -0.6 170,182 + GFF4583 0.14 +0.5 170,182 + GFF4583 0.14 -0.3 170,182 + GFF4583 0.14 +0.4 170,183 - GFF4583 0.14 -0.6 170,183 - GFF4583 0.14 -0.4 170,284 + GFF4583 0.18 -0.4 170,284 + GFF4583 0.18 -2.1 170,284 + GFF4583 0.18 -0.3 170,284 + GFF4583 0.18 -2.5 170,285 - GFF4583 0.18 -1.3 170,285 - GFF4583 0.18 -1.4 170,285 - GFF4583 0.18 +0.1 170,285 - GFF4583 0.18 -0.3 170,285 - GFF4583 0.18 -1.6 170,285 - GFF4583 0.18 +0.6 170,285 - GFF4583 0.18 -0.3 170,353 + GFF4583 0.21 +1.2 170,427 + GFF4583 0.24 +0.8 170,427 + GFF4583 0.24 -0.6 170,428 - GFF4583 0.24 +0.8 170,428 - GFF4583 0.24 -0.8 170,428 - GFF4583 0.24 -0.9 170,428 - GFF4583 0.24 -0.1
Or see this region's nucleotide sequence