Strain Fitness in Xanthobacter sp. DMC5 around GFF4580

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4579 and GFF4580 are separated by 211 nucleotidesGFF4580 and GFF4581 are separated by 74 nucleotidesGFF4581 and GFF4582 overlap by 4 nucleotides GFF4579 - O-acetylserine sulfhydrylase, at 166,166 to 167,149 GFF4579 GFF4580 - HTH-type transcriptional regulator CymR, at 167,361 to 167,801 GFF4580 GFF4581 - Deoxyuridine 5'-triphosphate nucleotidohydrolase, at 167,876 to 168,340 GFF4581 GFF4582 - Coenzyme A biosynthesis bifunctional protein CoaBC, at 168,337 to 169,554 GFF4582 Position (kb) 167 168Strain fitness (log2 ratio) -2 -1 0 1at 167.088 kb on + strandat 167.089 kb on - strandat 167.288 kb on + strandat 167.289 kb on - strandat 167.289 kb on - strandat 167.820 kb on + strandat 167.821 kb on - strandat 168.335 kb on - strandat 168.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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167,088 + +0.3
167,089 - -0.4
167,288 + -2.0
167,289 - +0.2
167,289 - -0.2
167,820 + -1.8
167,821 - -0.8
168,335 - -0.3
168,335 - +1.2

Or see this region's nucleotide sequence