Strain Fitness in Xanthobacter sp. DMC5 around GFF4571

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4569 and GFF4570 overlap by 4 nucleotidesGFF4570 and GFF4571 are separated by 10 nucleotidesGFF4571 and GFF4572 are separated by 193 nucleotides GFF4569 - Limonene 1,2-monooxygenase, at 155,847 to 156,830 GFF4569 GFF4570 - Cytidylate kinase, at 156,827 to 157,447 GFF4570 GFF4571 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 157,458 to 158,840 GFF4571 GFF4572 - hypothetical protein, at 159,034 to 159,429 GFF4572 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 156.465 kb on + strand, within GFF4569at 158.863 kb on - strandat 159.011 kb on + strandat 159.759 kb on + strandat 159.759 kb on + strandat 159.759 kb on + strandat 159.759 kb on + strandat 159.760 kb on - strandat 159.760 kb on - strandat 159.760 kb on - strandat 159.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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156,465 + GFF4569 0.63 +0.1
158,863 - -0.1
159,011 + -0.2
159,759 + -1.5
159,759 + +0.6
159,759 + +0.5
159,759 + -1.9
159,760 - +2.0
159,760 - -0.2
159,760 - +0.1
159,760 - +0.3

Or see this region's nucleotide sequence