Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4561 and GFF4562 overlap by 4 nucleotides GFF4562 and GFF4563 are separated by 49 nucleotides
GFF4561 - Virginiamycin B lyase, at 147,074 to 149,716
GFF4561
GFF4562 - Putative FAD-dependent oxidoreductase LodB, at 149,713 to 150,771
GFF4562
GFF4563 - 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 150,821 to 152,392
GFF4563
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1
2
3 at 148.919 kb on + strand, within GFF4561 at 148.920 kb on - strand, within GFF4561 at 148.937 kb on + strand, within GFF4561 at 148.938 kb on - strand, within GFF4561 at 149.090 kb on + strand, within GFF4561 at 149.090 kb on + strand, within GFF4561 at 149.210 kb on + strand, within GFF4561 at 149.210 kb on + strand, within GFF4561 at 149.210 kb on + strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.447 kb on + strand, within GFF4561 at 149.460 kb on - strand at 149.460 kb on - strand at 149.468 kb on + strand at 149.468 kb on + strand at 149.469 kb on - strand at 149.597 kb on + strand at 149.597 kb on + strand at 149.597 kb on + strand at 149.597 kb on + strand at 149.825 kb on + strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 150.497 kb on - strand, within GFF4562 at 151.113 kb on - strand, within GFF4563 at 151.421 kb on + strand, within GFF4563 at 151.421 kb on + strand, within GFF4563 at 151.421 kb on + strand, within GFF4563 at 151.421 kb on + strand, within GFF4563 at 151.422 kb on - strand, within GFF4563 at 151.422 kb on - strand, within GFF4563 at 151.422 kb on - strand, within GFF4563 at 151.422 kb on - strand, within GFF4563 at 151.484 kb on + strand, within GFF4563 at 151.484 kb on + strand, within GFF4563 at 151.547 kb on + strand, within GFF4563 at 151.602 kb on - strand, within GFF4563 at 151.602 kb on - strand, within GFF4563 at 151.602 kb on - strand, within GFF4563 at 151.622 kb on + strand, within GFF4563 at 151.622 kb on + strand, within GFF4563
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 148,919 + GFF4561 0.70 +0.5 148,920 - GFF4561 0.70 -0.9 148,937 + GFF4561 0.70 +0.1 148,938 - GFF4561 0.71 -0.3 149,090 + GFF4561 0.76 +0.6 149,090 + GFF4561 0.76 +1.2 149,210 + GFF4561 0.81 +1.1 149,210 + GFF4561 0.81 -0.8 149,210 + GFF4561 0.81 -0.3 149,211 - GFF4561 0.81 +0.2 149,211 - GFF4561 0.81 +0.6 149,211 - GFF4561 0.81 +0.8 149,211 - GFF4561 0.81 +0.3 149,447 + GFF4561 0.90 +3.2 149,460 - -0.7 149,460 - +0.2 149,468 + +0.0 149,468 + -1.4 149,469 - -0.1 149,597 + -1.1 149,597 + +1.0 149,597 + -0.0 149,597 + +0.4 149,825 + GFF4562 0.11 -0.3 149,826 - GFF4562 0.11 +1.2 149,826 - GFF4562 0.11 -0.5 149,826 - GFF4562 0.11 -0.3 149,826 - GFF4562 0.11 +1.3 150,497 - GFF4562 0.74 +0.0 151,113 - GFF4563 0.19 -0.2 151,421 + GFF4563 0.38 +1.5 151,421 + GFF4563 0.38 +0.4 151,421 + GFF4563 0.38 -0.1 151,421 + GFF4563 0.38 +0.3 151,422 - GFF4563 0.38 -1.0 151,422 - GFF4563 0.38 +1.8 151,422 - GFF4563 0.38 -0.4 151,422 - GFF4563 0.38 +0.4 151,484 + GFF4563 0.42 +0.7 151,484 + GFF4563 0.42 -0.1 151,547 + GFF4563 0.46 -1.1 151,602 - GFF4563 0.50 +0.5 151,602 - GFF4563 0.50 -1.5 151,602 - GFF4563 0.50 +1.1 151,622 + GFF4563 0.51 -0.7 151,622 + GFF4563 0.51 -1.6
Or see this region's nucleotide sequence