Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4552 and GFF4553 are separated by 231 nucleotides GFF4553 and GFF4554 are separated by 67 nucleotides GFF4554 and GFF4555 are separated by 143 nucleotides
GFF4552 - Ferredoxin--NADP reductase, at 134,513 to 135,286
GFF4552
GFF4553 - Glutathione S-transferase GST-6.0, at 135,518 to 136,153
GFF4553
GFF4554 - Calcium-transporting ATPase, at 136,221 to 139,043
GFF4554
GFF4555 - hypothetical protein, at 139,187 to 141,130
GFF4555
Position (kb) 136
137
138
139
140 Strain fitness (log2 ratio) -1
0
1
2 at 135.254 kb on + strand at 135.254 kb on + strand at 135.254 kb on + strand at 135.254 kb on + strand at 135.255 kb on - strand at 135.284 kb on + strand at 135.647 kb on + strand, within GFF4553 at 135.872 kb on + strand, within GFF4553 at 135.872 kb on + strand, within GFF4553 at 136.029 kb on - strand, within GFF4553 at 136.030 kb on + strand, within GFF4553 at 136.171 kb on - strand at 136.214 kb on + strand at 136.431 kb on - strand at 136.498 kb on - strand at 136.548 kb on + strand, within GFF4554 at 136.549 kb on - strand, within GFF4554 at 136.549 kb on - strand, within GFF4554 at 136.863 kb on + strand, within GFF4554 at 136.993 kb on + strand, within GFF4554 at 138.109 kb on - strand, within GFF4554 at 138.354 kb on - strand, within GFF4554 at 138.354 kb on - strand, within GFF4554 at 138.373 kb on - strand, within GFF4554 at 138.373 kb on - strand, within GFF4554 at 138.736 kb on - strand, within GFF4554 at 138.895 kb on - strand at 139.077 kb on + strand at 139.077 kb on + strand at 139.077 kb on + strand at 139.943 kb on + strand, within GFF4555 at 139.944 kb on - strand, within GFF4555
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 135,254 + -0.2 135,254 + +1.4 135,254 + -0.1 135,254 + +0.3 135,255 - -0.1 135,284 + -0.3 135,647 + GFF4553 0.20 -1.1 135,872 + GFF4553 0.56 +0.3 135,872 + GFF4553 0.56 -0.9 136,029 - GFF4553 0.80 +1.6 136,030 + GFF4553 0.81 -1.0 136,171 - -0.6 136,214 + +1.0 136,431 - -0.3 136,498 - +2.1 136,548 + GFF4554 0.12 +1.4 136,549 - GFF4554 0.12 +0.1 136,549 - GFF4554 0.12 +0.1 136,863 + GFF4554 0.23 +0.3 136,993 + GFF4554 0.27 +0.5 138,109 - GFF4554 0.67 +0.5 138,354 - GFF4554 0.76 +0.8 138,354 - GFF4554 0.76 -0.1 138,373 - GFF4554 0.76 -0.3 138,373 - GFF4554 0.76 -0.3 138,736 - GFF4554 0.89 +0.8 138,895 - -1.2 139,077 + +1.4 139,077 + +0.6 139,077 + +0.0 139,943 + GFF4555 0.39 -1.2 139,944 - GFF4555 0.39 +0.0
Or see this region's nucleotide sequence