Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4549 and GFF4550 are separated by 150 nucleotides GFF4550 and GFF4551 are separated by 41 nucleotides
GFF4549 - hypothetical protein, at 130,149 to 131,840
GFF4549
GFF4550 - HTH-type transcriptional repressor NicS, at 131,991 to 132,674
GFF4550
GFF4551 - Caffeate CoA-transferase, at 132,716 to 134,320
GFF4551
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.023 kb on - strand, within GFF4549 at 131.080 kb on - strand, within GFF4549 at 131.227 kb on - strand, within GFF4549 at 131.297 kb on + strand, within GFF4549 at 131.297 kb on + strand, within GFF4549 at 131.359 kb on + strand, within GFF4549 at 131.517 kb on - strand, within GFF4549 at 131.697 kb on - strand at 131.756 kb on - strand at 131.855 kb on + strand at 131.855 kb on + strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.872 kb on + strand at 131.872 kb on + strand at 131.872 kb on + strand at 131.872 kb on + strand at 131.897 kb on + strand at 131.897 kb on + strand at 131.897 kb on + strand at 131.898 kb on - strand at 131.898 kb on - strand at 131.898 kb on - strand at 131.898 kb on - strand at 131.904 kb on + strand at 131.904 kb on + strand at 131.904 kb on + strand at 131.905 kb on - strand at 131.918 kb on - strand at 131.918 kb on - strand at 131.918 kb on - strand at 132.005 kb on + strand at 132.006 kb on - strand at 132.007 kb on + strand at 132.008 kb on - strand at 132.008 kb on - strand at 132.008 kb on - strand at 132.112 kb on + strand, within GFF4550 at 132.112 kb on + strand, within GFF4550 at 132.113 kb on - strand, within GFF4550 at 132.118 kb on + strand, within GFF4550 at 132.119 kb on - strand, within GFF4550 at 132.119 kb on - strand, within GFF4550 at 132.142 kb on + strand, within GFF4550 at 132.142 kb on + strand, within GFF4550 at 132.143 kb on - strand, within GFF4550 at 132.266 kb on - strand, within GFF4550 at 132.421 kb on + strand, within GFF4550 at 132.422 kb on - strand, within GFF4550 at 132.422 kb on - strand, within GFF4550 at 132.422 kb on - strand, within GFF4550 at 132.446 kb on - strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.476 kb on - strand, within GFF4550 at 132.476 kb on - strand, within GFF4550 at 132.476 kb on - strand, within GFF4550 at 132.578 kb on + strand, within GFF4550 at 132.957 kb on + strand, within GFF4551 at 132.957 kb on + strand, within GFF4551 at 132.957 kb on + strand, within GFF4551 at 132.958 kb on - strand, within GFF4551 at 132.958 kb on - strand, within GFF4551 at 132.958 kb on - strand, within GFF4551 at 132.987 kb on + strand, within GFF4551 at 132.987 kb on + strand, within GFF4551 at 132.997 kb on + strand, within GFF4551 at 132.997 kb on + strand, within GFF4551 at 132.999 kb on + strand, within GFF4551 at 133.000 kb on - strand, within GFF4551 at 133.258 kb on - strand, within GFF4551 at 133.272 kb on + strand, within GFF4551 at 133.455 kb on + strand, within GFF4551 at 133.456 kb on - strand, within GFF4551 at 133.456 kb on - strand, within GFF4551 at 133.559 kb on - strand, within GFF4551 at 133.560 kb on + strand, within GFF4551 at 133.560 kb on + strand, within GFF4551 at 133.570 kb on + strand, within GFF4551 at 133.572 kb on + strand, within GFF4551 at 133.572 kb on + strand, within GFF4551 at 133.572 kb on + strand, within GFF4551 at 133.572 kb on + strand, within GFF4551 at 133.572 kb on + strand, within GFF4551 at 133.572 kb on + strand, within GFF4551 at 133.573 kb on - strand, within GFF4551 at 133.573 kb on - strand, within GFF4551 at 133.573 kb on - strand, within GFF4551 at 133.573 kb on - strand, within GFF4551
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 131,023 - GFF4549 0.52 +0.1 131,080 - GFF4549 0.55 +1.2 131,227 - GFF4549 0.64 -1.2 131,297 + GFF4549 0.68 +0.1 131,297 + GFF4549 0.68 +0.2 131,359 + GFF4549 0.72 -0.9 131,517 - GFF4549 0.81 -0.6 131,697 - -1.7 131,756 - +1.1 131,855 + -0.2 131,855 + +1.0 131,858 - +0.0 131,858 - +1.9 131,858 - +0.2 131,858 - -0.5 131,858 - +1.8 131,872 + -0.9 131,872 + +0.0 131,872 + +0.4 131,872 + +1.2 131,897 + +0.1 131,897 + -0.5 131,897 + +0.0 131,898 - +1.6 131,898 - +0.0 131,898 - +0.4 131,898 - -0.2 131,904 + +0.4 131,904 + +0.8 131,904 + +0.6 131,905 - +0.8 131,918 - -0.4 131,918 - +0.9 131,918 - +0.1 132,005 + +2.4 132,006 - -0.1 132,007 + +0.1 132,008 - +1.5 132,008 - +0.7 132,008 - -0.4 132,112 + GFF4550 0.18 -0.8 132,112 + GFF4550 0.18 -1.8 132,113 - GFF4550 0.18 +0.1 132,118 + GFF4550 0.19 -0.4 132,119 - GFF4550 0.19 +1.0 132,119 - GFF4550 0.19 -0.7 132,142 + GFF4550 0.22 +0.0 132,142 + GFF4550 0.22 -0.1 132,143 - GFF4550 0.22 +0.6 132,266 - GFF4550 0.40 +0.0 132,421 + GFF4550 0.63 +1.4 132,422 - GFF4550 0.63 -1.5 132,422 - GFF4550 0.63 +0.9 132,422 - GFF4550 0.63 +0.5 132,446 - GFF4550 0.67 +0.1 132,475 + GFF4550 0.71 +1.0 132,475 + GFF4550 0.71 -1.5 132,475 + GFF4550 0.71 +0.3 132,475 + GFF4550 0.71 -0.5 132,476 - GFF4550 0.71 +1.3 132,476 - GFF4550 0.71 -0.2 132,476 - GFF4550 0.71 +1.2 132,578 + GFF4550 0.86 -1.1 132,957 + GFF4551 0.15 -0.1 132,957 + GFF4551 0.15 -0.1 132,957 + GFF4551 0.15 -1.5 132,958 - GFF4551 0.15 +1.2 132,958 - GFF4551 0.15 -0.3 132,958 - GFF4551 0.15 +0.5 132,987 + GFF4551 0.17 +0.4 132,987 + GFF4551 0.17 +0.9 132,997 + GFF4551 0.18 +0.6 132,997 + GFF4551 0.18 +0.2 132,999 + GFF4551 0.18 -0.3 133,000 - GFF4551 0.18 -0.7 133,258 - GFF4551 0.34 -0.1 133,272 + GFF4551 0.35 -0.4 133,455 + GFF4551 0.46 +0.1 133,456 - GFF4551 0.46 -0.1 133,456 - GFF4551 0.46 +0.6 133,559 - GFF4551 0.53 -0.8 133,560 + GFF4551 0.53 -1.1 133,560 + GFF4551 0.53 -0.2 133,570 + GFF4551 0.53 -0.6 133,572 + GFF4551 0.53 +0.3 133,572 + GFF4551 0.53 +0.1 133,572 + GFF4551 0.53 +0.2 133,572 + GFF4551 0.53 +0.0 133,572 + GFF4551 0.53 -0.6 133,572 + GFF4551 0.53 +0.1 133,573 - GFF4551 0.53 -0.4 133,573 - GFF4551 0.53 +0.8 133,573 - GFF4551 0.53 -0.3 133,573 - GFF4551 0.53 -0.3
Or see this region's nucleotide sequence