Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4545 and GFF4546 are separated by 15 nucleotides GFF4546 and GFF4547 overlap by 4 nucleotides GFF4547 and GFF4548 are separated by 31 nucleotides
GFF4545 - hypothetical protein, at 124,713 to 126,686
GFF4545
GFF4546 - Short-chain-enoyl-CoA hydratase, at 126,702 to 127,493
GFF4546
GFF4547 - 2-hydroxy-3-oxopropionate reductase, at 127,490 to 128,401
GFF4547
GFF4548 - NADPH dehydrogenase, at 128,433 to 129,908
GFF4548
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 125.710 kb on - strand, within GFF4545 at 125.711 kb on - strand, within GFF4545 at 125.738 kb on + strand, within GFF4545 at 125.740 kb on + strand, within GFF4545 at 125.740 kb on + strand, within GFF4545 at 125.793 kb on + strand, within GFF4545 at 125.794 kb on - strand, within GFF4545 at 125.794 kb on - strand, within GFF4545 at 125.821 kb on + strand, within GFF4545 at 125.821 kb on + strand, within GFF4545 at 125.879 kb on + strand, within GFF4545 at 125.886 kb on + strand, within GFF4545 at 125.918 kb on + strand, within GFF4545 at 125.995 kb on - strand, within GFF4545 at 126.073 kb on + strand, within GFF4545 at 126.107 kb on - strand, within GFF4545 at 126.136 kb on + strand, within GFF4545 at 126.176 kb on + strand, within GFF4545 at 126.224 kb on - strand, within GFF4545 at 126.300 kb on - strand, within GFF4545 at 126.376 kb on + strand, within GFF4545 at 126.376 kb on + strand, within GFF4545 at 126.405 kb on - strand, within GFF4545 at 126.557 kb on + strand at 126.558 kb on - strand at 126.577 kb on - strand at 126.591 kb on - strand at 126.606 kb on - strand at 127.211 kb on - strand, within GFF4546 at 127.684 kb on - strand, within GFF4547 at 127.684 kb on - strand, within GFF4547 at 127.792 kb on + strand, within GFF4547 at 127.793 kb on - strand, within GFF4547 at 128.040 kb on + strand, within GFF4547 at 128.422 kb on - strand at 128.422 kb on - strand at 128.422 kb on - strand at 128.422 kb on - strand at 128.430 kb on - strand at 128.430 kb on - strand at 128.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 125,710 - GFF4545 0.51 +0.7 125,711 - GFF4545 0.51 +0.9 125,738 + GFF4545 0.52 +0.6 125,740 + GFF4545 0.52 +0.2 125,740 + GFF4545 0.52 -0.5 125,793 + GFF4545 0.55 -0.3 125,794 - GFF4545 0.55 -0.3 125,794 - GFF4545 0.55 +3.4 125,821 + GFF4545 0.56 -1.3 125,821 + GFF4545 0.56 +0.2 125,879 + GFF4545 0.59 -0.1 125,886 + GFF4545 0.59 +1.6 125,918 + GFF4545 0.61 -0.2 125,995 - GFF4545 0.65 +1.5 126,073 + GFF4545 0.69 +0.8 126,107 - GFF4545 0.71 +0.1 126,136 + GFF4545 0.72 -0.5 126,176 + GFF4545 0.74 +0.7 126,224 - GFF4545 0.77 +1.1 126,300 - GFF4545 0.80 +0.3 126,376 + GFF4545 0.84 +0.4 126,376 + GFF4545 0.84 -0.1 126,405 - GFF4545 0.86 +0.4 126,557 + -0.7 126,558 - -1.5 126,577 - -1.2 126,591 - +1.5 126,606 - +0.2 127,211 - GFF4546 0.64 -0.2 127,684 - GFF4547 0.21 -0.0 127,684 - GFF4547 0.21 -3.0 127,792 + GFF4547 0.33 -0.3 127,793 - GFF4547 0.33 -0.8 128,040 + GFF4547 0.60 +0.4 128,422 - -0.5 128,422 - +0.2 128,422 - -0.1 128,422 - -1.2 128,430 - -0.7 128,430 - +0.4 128,476 - -0.5
Or see this region's nucleotide sequence