Strain Fitness in Xanthobacter sp. DMC5 around GFF4541

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4540 and GFF4541 are separated by 97 nucleotidesGFF4541 and GFF4542 are separated by 472 nucleotides GFF4540 - HTH-type transcriptional repressor NicR, at 119,515 to 120,033 GFF4540 GFF4541 - Coniferyl aldehyde dehydrogenase, at 120,131 to 121,423 GFF4541 GFF4542 - Riboflavin-binding protein RibY, at 121,896 to 122,891 GFF4542 Position (kb) 120 121 122Strain fitness (log2 ratio) -1 0 1 2at 119.146 kb on + strandat 119.573 kb on - strand, within GFF4540at 119.654 kb on - strand, within GFF4540at 119.654 kb on - strand, within GFF4540at 119.860 kb on + strand, within GFF4540at 119.860 kb on + strand, within GFF4540at 119.861 kb on - strand, within GFF4540at 119.861 kb on - strand, within GFF4540at 119.861 kb on - strand, within GFF4540at 120.279 kb on + strand, within GFF4541at 120.279 kb on + strand, within GFF4541at 120.279 kb on + strand, within GFF4541at 120.279 kb on + strand, within GFF4541at 120.280 kb on - strand, within GFF4541at 120.302 kb on + strand, within GFF4541at 120.303 kb on - strand, within GFF4541at 120.303 kb on - strand, within GFF4541at 120.353 kb on + strand, within GFF4541at 120.423 kb on + strand, within GFF4541at 120.423 kb on + strand, within GFF4541at 120.423 kb on + strand, within GFF4541at 120.424 kb on - strand, within GFF4541at 120.424 kb on - strand, within GFF4541at 120.497 kb on + strand, within GFF4541at 120.682 kb on + strand, within GFF4541at 120.780 kb on + strand, within GFF4541at 120.780 kb on + strand, within GFF4541at 120.781 kb on - strand, within GFF4541at 120.858 kb on + strand, within GFF4541at 120.858 kb on + strand, within GFF4541at 120.859 kb on - strand, within GFF4541at 120.859 kb on - strand, within GFF4541at 120.859 kb on - strand, within GFF4541at 120.859 kb on - strand, within GFF4541at 121.179 kb on + strand, within GFF4541at 121.180 kb on - strand, within GFF4541at 121.230 kb on + strand, within GFF4541at 121.230 kb on + strand, within GFF4541at 121.230 kb on + strand, within GFF4541at 121.230 kb on + strand, within GFF4541at 121.230 kb on + strand, within GFF4541at 121.331 kb on + strandat 121.385 kb on + strandat 121.519 kb on + strandat 121.520 kb on - strandat 121.660 kb on - strandat 121.668 kb on + strandat 121.668 kb on + strandat 121.669 kb on - strandat 121.669 kb on - strandat 121.669 kb on - strandat 121.757 kb on + strandat 121.757 kb on + strandat 121.763 kb on + strandat 121.892 kb on + strandat 121.945 kb on + strandat 121.945 kb on + strandat 122.198 kb on + strand, within GFF4542at 122.199 kb on - strand, within GFF4542at 122.304 kb on + strand, within GFF4542at 122.306 kb on + strand, within GFF4542at 122.348 kb on - strand, within GFF4542at 122.348 kb on - strand, within GFF4542

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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119,146 + -0.6
119,573 - GFF4540 0.11 +0.3
119,654 - GFF4540 0.27 +1.1
119,654 - GFF4540 0.27 +2.2
119,860 + GFF4540 0.66 +1.7
119,860 + GFF4540 0.66 -1.1
119,861 - GFF4540 0.67 +0.0
119,861 - GFF4540 0.67 +1.0
119,861 - GFF4540 0.67 +1.8
120,279 + GFF4541 0.11 +0.7
120,279 + GFF4541 0.11 -0.3
120,279 + GFF4541 0.11 -0.6
120,279 + GFF4541 0.11 -0.8
120,280 - GFF4541 0.12 +0.3
120,302 + GFF4541 0.13 -1.1
120,303 - GFF4541 0.13 -0.3
120,303 - GFF4541 0.13 +0.2
120,353 + GFF4541 0.17 +0.3
120,423 + GFF4541 0.23 +0.0
120,423 + GFF4541 0.23 +0.5
120,423 + GFF4541 0.23 -0.4
120,424 - GFF4541 0.23 +1.3
120,424 - GFF4541 0.23 +0.8
120,497 + GFF4541 0.28 +0.7
120,682 + GFF4541 0.43 +0.4
120,780 + GFF4541 0.50 +0.0
120,780 + GFF4541 0.50 +0.0
120,781 - GFF4541 0.50 +0.3
120,858 + GFF4541 0.56 +0.3
120,858 + GFF4541 0.56 +0.8
120,859 - GFF4541 0.56 -1.5
120,859 - GFF4541 0.56 +0.9
120,859 - GFF4541 0.56 -0.1
120,859 - GFF4541 0.56 +1.3
121,179 + GFF4541 0.81 +1.1
121,180 - GFF4541 0.81 -0.7
121,230 + GFF4541 0.85 -0.3
121,230 + GFF4541 0.85 -0.2
121,230 + GFF4541 0.85 +0.3
121,230 + GFF4541 0.85 -1.0
121,230 + GFF4541 0.85 +1.6
121,331 + +0.0
121,385 + +0.6
121,519 + +0.0
121,520 - -0.7
121,660 - +0.9
121,668 + -0.2
121,668 + -0.5
121,669 - +1.0
121,669 - +0.2
121,669 - +0.9
121,757 + +0.5
121,757 + +0.5
121,763 + +0.7
121,892 + -0.2
121,945 + -1.2
121,945 + -0.3
122,198 + GFF4542 0.30 -0.2
122,199 - GFF4542 0.30 -0.6
122,304 + GFF4542 0.41 +0.4
122,306 + GFF4542 0.41 +0.2
122,348 - GFF4542 0.45 +0.6
122,348 - GFF4542 0.45 -1.0

Or see this region's nucleotide sequence