Strain Fitness in Xanthobacter sp. DMC5 around GFF450

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF449 and GFF450 are separated by 158 nucleotidesGFF450 and GFF451 are separated by 84 nucleotides GFF449 - Alkyl hydroperoxide reductase subunit F, at 472,476 to 473,417 GFF449 GFF450 - hypothetical protein, at 473,576 to 473,866 GFF450 GFF451 - Beta-barrel assembly-enhancing protease, at 473,951 to 476,056 GFF451 Position (kb) 473 474Strain fitness (log2 ratio) -2 -1 0 1 2at 472.664 kb on - strand, within GFF449at 472.664 kb on - strand, within GFF449at 472.756 kb on + strand, within GFF449at 472.756 kb on + strand, within GFF449at 472.757 kb on - strand, within GFF449at 472.772 kb on - strand, within GFF449at 472.835 kb on - strand, within GFF449at 472.849 kb on - strand, within GFF449at 472.849 kb on - strand, within GFF449at 472.849 kb on - strand, within GFF449at 472.893 kb on + strand, within GFF449at 472.894 kb on - strand, within GFF449at 472.948 kb on + strand, within GFF449at 472.948 kb on + strand, within GFF449at 472.948 kb on + strand, within GFF449at 472.949 kb on - strand, within GFF449at 472.949 kb on - strand, within GFF449at 472.949 kb on - strand, within GFF449at 473.403 kb on + strandat 473.403 kb on + strandat 473.404 kb on - strandat 473.460 kb on + strandat 473.465 kb on + strandat 473.488 kb on + strandat 473.735 kb on + strand, within GFF450at 473.736 kb on - strand, within GFF450at 473.753 kb on + strand, within GFF450at 473.824 kb on + strand, within GFF450at 473.864 kb on + strandat 473.864 kb on + strandat 474.025 kb on - strandat 474.025 kb on - strandat 474.025 kb on - strandat 474.171 kb on + strand, within GFF451at 474.171 kb on + strand, within GFF451at 474.234 kb on + strand, within GFF451at 474.235 kb on - strand, within GFF451at 474.235 kb on - strand, within GFF451at 474.270 kb on + strand, within GFF451at 474.270 kb on + strand, within GFF451at 474.271 kb on - strand, within GFF451at 474.277 kb on - strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.396 kb on + strand, within GFF451at 474.397 kb on - strand, within GFF451at 474.397 kb on - strand, within GFF451at 474.397 kb on - strand, within GFF451at 474.463 kb on - strand, within GFF451at 474.519 kb on + strand, within GFF451at 474.771 kb on + strand, within GFF451at 474.771 kb on + strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.772 kb on - strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.849 kb on + strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451at 474.850 kb on - strand, within GFF451

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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472,664 - GFF449 0.20 +1.3
472,664 - GFF449 0.20 -0.2
472,756 + GFF449 0.30 +1.0
472,756 + GFF449 0.30 -0.3
472,757 - GFF449 0.30 -0.8
472,772 - GFF449 0.31 -0.2
472,835 - GFF449 0.38 -0.1
472,849 - GFF449 0.40 -0.2
472,849 - GFF449 0.40 +0.2
472,849 - GFF449 0.40 -0.2
472,893 + GFF449 0.44 -0.6
472,894 - GFF449 0.44 +1.5
472,948 + GFF449 0.50 +0.1
472,948 + GFF449 0.50 +0.5
472,948 + GFF449 0.50 +1.3
472,949 - GFF449 0.50 +1.4
472,949 - GFF449 0.50 +0.2
472,949 - GFF449 0.50 -0.7
473,403 + -0.5
473,403 + -0.4
473,404 - -0.6
473,460 + +0.5
473,465 + -0.7
473,488 + -0.2
473,735 + GFF450 0.55 +0.0
473,736 - GFF450 0.55 -0.4
473,753 + GFF450 0.61 +0.9
473,824 + GFF450 0.85 -1.6
473,864 + +0.5
473,864 + +0.9
474,025 - -0.4
474,025 - -0.1
474,025 - +0.4
474,171 + GFF451 0.10 -1.5
474,171 + GFF451 0.10 -0.2
474,234 + GFF451 0.13 +0.1
474,235 - GFF451 0.13 -0.1
474,235 - GFF451 0.13 +0.7
474,270 + GFF451 0.15 -0.0
474,270 + GFF451 0.15 -0.5
474,271 - GFF451 0.15 +0.1
474,277 - GFF451 0.15 +0.6
474,396 + GFF451 0.21 -0.1
474,396 + GFF451 0.21 -0.8
474,396 + GFF451 0.21 +1.3
474,396 + GFF451 0.21 -0.0
474,397 - GFF451 0.21 -1.9
474,397 - GFF451 0.21 -0.7
474,397 - GFF451 0.21 -1.2
474,463 - GFF451 0.24 +1.8
474,519 + GFF451 0.27 -0.6
474,771 + GFF451 0.39 -1.6
474,771 + GFF451 0.39 -0.0
474,772 - GFF451 0.39 -1.2
474,772 - GFF451 0.39 -0.8
474,772 - GFF451 0.39 +0.1
474,772 - GFF451 0.39 -0.5
474,772 - GFF451 0.39 +0.2
474,849 + GFF451 0.43 +0.4
474,849 + GFF451 0.43 -0.3
474,849 + GFF451 0.43 +0.3
474,849 + GFF451 0.43 -0.7
474,849 + GFF451 0.43 -1.5
474,849 + GFF451 0.43 +1.5
474,850 - GFF451 0.43 -0.4
474,850 - GFF451 0.43 -0.8
474,850 - GFF451 0.43 -2.1
474,850 - GFF451 0.43 +0.4
474,850 - GFF451 0.43 -0.1
474,850 - GFF451 0.43 +1.1

Or see this region's nucleotide sequence