Strain Fitness in Xanthobacter sp. DMC5 around GFF4497

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4496 and GFF4497 are separated by 7 nucleotidesGFF4497 and GFF4498 are separated by 27 nucleotidesGFF4498 and GFF4499 overlap by 20 nucleotides GFF4496 - Flagellar motor switch protein FliG, at 73,034 to 74,056 GFF4496 GFF4497 - Flagellar motor switch protein FliN, at 74,064 to 74,414 GFF4497 GFF4498 - hypothetical protein, at 74,442 to 74,744 GFF4498 GFF4499 - hypothetical protein, at 74,725 to 75,660 GFF4499 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1at 73.074 kb on + strandat 73.678 kb on - strand, within GFF4496at 73.678 kb on - strand, within GFF4496at 74.632 kb on + strand, within GFF4498at 74.632 kb on + strand, within GFF4498at 74.632 kb on + strand, within GFF4498at 74.792 kb on + strandat 74.793 kb on - strandat 75.301 kb on - strand, within GFF4499at 75.350 kb on + strand, within GFF4499

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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73,074 + -0.7
73,678 - GFF4496 0.63 -2.5
73,678 - GFF4496 0.63 -2.1
74,632 + GFF4498 0.63 -1.7
74,632 + GFF4498 0.63 -2.2
74,632 + GFF4498 0.63 -1.4
74,792 + -1.8
74,793 - -0.2
75,301 - GFF4499 0.62 -1.4
75,350 + GFF4499 0.67 -0.2

Or see this region's nucleotide sequence