Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF447 and GFF448 are separated by 2 nucleotides GFF448 and GFF449 are separated by 12 nucleotides GFF449 and GFF450 are separated by 158 nucleotides GFF450 and GFF451 are separated by 84 nucleotides
GFF447 - hypothetical protein, at 470,869 to 471,666
GFF447
GFF448 - Vitamin B12 import ATP-binding protein BtuD, at 471,669 to 472,463
GFF448
GFF449 - Alkyl hydroperoxide reductase subunit F, at 472,476 to 473,417
GFF449
GFF450 - hypothetical protein, at 473,576 to 473,866
GFF450
GFF451 - Beta-barrel assembly-enhancing protease, at 473,951 to 476,056
GFF451
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1 at 472.326 kb on + strand, within GFF448 at 472.326 kb on + strand, within GFF448 at 472.326 kb on + strand, within GFF448 at 472.326 kb on + strand, within GFF448 at 472.477 kb on + strand at 472.477 kb on + strand at 472.664 kb on - strand, within GFF449 at 472.664 kb on - strand, within GFF449 at 472.756 kb on + strand, within GFF449 at 472.756 kb on + strand, within GFF449 at 472.757 kb on - strand, within GFF449 at 472.772 kb on - strand, within GFF449 at 472.835 kb on - strand, within GFF449 at 472.849 kb on - strand, within GFF449 at 472.849 kb on - strand, within GFF449 at 472.849 kb on - strand, within GFF449 at 472.893 kb on + strand, within GFF449 at 472.894 kb on - strand, within GFF449 at 472.948 kb on + strand, within GFF449 at 472.948 kb on + strand, within GFF449 at 472.948 kb on + strand, within GFF449 at 472.949 kb on - strand, within GFF449 at 472.949 kb on - strand, within GFF449 at 472.949 kb on - strand, within GFF449 at 473.403 kb on + strand at 473.403 kb on + strand at 473.404 kb on - strand at 473.460 kb on + strand at 473.465 kb on + strand at 473.488 kb on + strand at 473.735 kb on + strand, within GFF450 at 473.736 kb on - strand, within GFF450 at 473.753 kb on + strand, within GFF450 at 473.824 kb on + strand, within GFF450 at 473.864 kb on + strand at 473.864 kb on + strand at 474.025 kb on - strand at 474.025 kb on - strand at 474.025 kb on - strand at 474.171 kb on + strand, within GFF451 at 474.171 kb on + strand, within GFF451 at 474.234 kb on + strand, within GFF451 at 474.235 kb on - strand, within GFF451 at 474.235 kb on - strand, within GFF451 at 474.270 kb on + strand, within GFF451 at 474.270 kb on + strand, within GFF451 at 474.271 kb on - strand, within GFF451 at 474.277 kb on - strand, within GFF451 at 474.396 kb on + strand, within GFF451 at 474.396 kb on + strand, within GFF451 at 474.396 kb on + strand, within GFF451 at 474.396 kb on + strand, within GFF451 at 474.397 kb on - strand, within GFF451 at 474.397 kb on - strand, within GFF451 at 474.397 kb on - strand, within GFF451
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 472,326 + GFF448 0.83 -0.3 472,326 + GFF448 0.83 +0.3 472,326 + GFF448 0.83 -1.2 472,326 + GFF448 0.83 -1.3 472,477 + +0.8 472,477 + +0.1 472,664 - GFF449 0.20 +1.3 472,664 - GFF449 0.20 -0.2 472,756 + GFF449 0.30 +1.0 472,756 + GFF449 0.30 -0.3 472,757 - GFF449 0.30 -0.8 472,772 - GFF449 0.31 -0.2 472,835 - GFF449 0.38 -0.1 472,849 - GFF449 0.40 -0.2 472,849 - GFF449 0.40 +0.2 472,849 - GFF449 0.40 -0.2 472,893 + GFF449 0.44 -0.6 472,894 - GFF449 0.44 +1.5 472,948 + GFF449 0.50 +0.1 472,948 + GFF449 0.50 +0.5 472,948 + GFF449 0.50 +1.3 472,949 - GFF449 0.50 +1.4 472,949 - GFF449 0.50 +0.2 472,949 - GFF449 0.50 -0.7 473,403 + -0.5 473,403 + -0.4 473,404 - -0.6 473,460 + +0.5 473,465 + -0.7 473,488 + -0.2 473,735 + GFF450 0.55 +0.0 473,736 - GFF450 0.55 -0.4 473,753 + GFF450 0.61 +0.9 473,824 + GFF450 0.85 -1.6 473,864 + +0.5 473,864 + +0.9 474,025 - -0.4 474,025 - -0.1 474,025 - +0.4 474,171 + GFF451 0.10 -1.5 474,171 + GFF451 0.10 -0.2 474,234 + GFF451 0.13 +0.1 474,235 - GFF451 0.13 -0.1 474,235 - GFF451 0.13 +0.7 474,270 + GFF451 0.15 -0.0 474,270 + GFF451 0.15 -0.5 474,271 - GFF451 0.15 +0.1 474,277 - GFF451 0.15 +0.6 474,396 + GFF451 0.21 -0.1 474,396 + GFF451 0.21 -0.8 474,396 + GFF451 0.21 +1.3 474,396 + GFF451 0.21 -0.0 474,397 - GFF451 0.21 -1.9 474,397 - GFF451 0.21 -0.7 474,397 - GFF451 0.21 -1.2
Or see this region's nucleotide sequence